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This article is part of the supplement: Eighth International Conference on Bioinformatics (InCoB2009): Computational Biology

Open Access Proceedings

BOAT: Basic Oligonucleotide Alignment Tool

Shu-Qi Zhao, Jun Wang, Li Zhang, Jiong-Tang Li, Xiaocheng Gu, Ge Gao* and Liping Wei*

Author Affiliations

Center for Bioinformatics, National Laboratory of Protein Engineering and Plant Genetic Engineering, College of Life Sciences, Peking University, Beijing 100871, PR China

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BMC Genomics 2009, 10(Suppl 3):S2  doi:10.1186/1471-2164-10-S3-S2

Published: 3 December 2009

Additional files

Additional file 1:

The detailed analysis of benchmark result and the sequencing reads index schema of BOAT. Supplementary Figure S1 contains the number of mapped reads classified by the mismatch number for simulation dataset. Supplementary Figure S2 contains assessment of Sensitivity and Precision of SNP discovery by BOAT SNPcall function. Supplementary Figure S3 demonstrates the sequencing reads index schema of BOAT.

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Open Data

Additional file 2:

running parameters of all programs in benchmark comparison. Supplementary Table S1 shows the running parameters of all programs for real dataset. Supplementary Table S2 shows the running parameters of all programs for simulation dataset.

Format: PDF Size: 81KB Download file

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Open Data