Table 10

Descriptive words for both the unidirectional and bidirectional promoter sets. The top 25 words that are correlated in the two promoter sets, according to their overrepresentation scores. The Words had to be overrepresented according to SlnSES with at least a score of 1.5. Shown are the words with a distance between -0.11 and 0.11.

Word

Unidirectional

Bidirectional

Distance


CTTTGGCC

2.08857

2.23024

-0.100175818


AGGCAGGA

1.51526

1.64780

-0.093719933


CTCAGGAT

1.58527

1.71375

-0.090849079


GGGGGGAC

1.61803

1.70814

-0.063717392


CTTGCGGA

1.65530

1.73350

-0.055295750


CTGAGCAG

1.99183

2.05890

-0.047425652


GCCTGAGG

1.99183

2.04796

-0.039689904


TGAAGTGG

1.61803

1.66175

-0.030914708


GCCATCCG

1.86393

1.89589

-0.022599133


AGGTTGCA

2.20477

2.23024

-0.018010010


TCTGTGCC

1.84096

1.85915

-0.012862272


TACCACTA

1.86393

1.88037

-0.011624835


CAAAGAAT

1.61803

1.61872

-0.000487904


ACCGCTCA

1.61803

1.61872

-0.000487904


TATCTTAG

1.61803

1.61872

-0.000487904


AGAGTTCC

1.62605

1.61872

0.005183093


GTCGGCTT

1.90512

1.88037

0.017500893


CGCGCGCA

1.94164

1.90263

0.027584236


CAGGCCAG

1.95383

1.86972

0.059474751


ACAGAAAG

2.79686

2.70295

0.066404398


GTCAGGAG

2.40520

2.25776

0.104255824


GGAAGTGA

1.96108

1.81095

0.106157941


TAGAGAGC

1.99183

1.84125

0.106476139


TGCCAGGG

1.75813

1.60511

0.108201480


GCACAAGC

1.95383

1.80053

0.108399470


TTCACTTA

2.15055

1.99725

0.108399470


Lichtenberg et al. BMC Genomics 2009 10(Suppl 1):S18   doi:10.1186/1471-2164-10-S1-S18

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