Figure 4.

Predicted DNA-binding residues shown in the context of three-dimensional structures. Putative DNA-binding residues were predicted for the bacterial transcriptional regulator QacR (PDB ID: 1JT0) using BindN-RF (A) and BindN (B). In each protein-DNA complex, true positives (correctly predicted DNA-binding residues) are in red spacefill; true negatives in green wireframe; false positives in yellow spacefill; false negatives in blue spacefill; and the DNA double helix in purple.

Wang et al. BMC Genomics 2009 10(Suppl 1):S1   doi:10.1186/1471-2164-10-S1-S1