Genome-scale identification of Caenorhabditis elegans regulatory elements by tiling-array mapping of DNase I hypersensitive sites

doi:10.1186/1471-2164-10-92

BMC Genomics
Volume 10

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Sheng S
Wang J
Skogerbø G
Zhu X
Chen R

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Chen R
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Research article

Genome-scale identification of Caenorhabditis elegans regulatory elements by tiling-array mapping of DNase I hypersensitive sites

Baochen Shi^*¹ , Xiangqian Guo^*¹^,3 , Tao Wu^*¹ , Sitong Sheng² , Jie Wang¹ , Geir Skogerbø¹ , Xiaopeng Zhu¹ and Runsheng Chen¹

¹Bioinformatics Laboratory and National Laboratory of Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, PR China

²Department of Molecular Physiology & Biological Physics, School of Medicine, University of Virginia, 1300 Jefferson Park Ave, Charlottesville, Virginia 22908, USA

³Graduate School of the Chinese Academy of Science, Beijing 100080, PR China

author email corresponding author email* Contributed equally

BMC Genomics 2009, 10:92doi:10.1186/1471-2164-10-92


Published:	25 February 2009

Additional files

Additional file 1:

Supplemental Data. The data provided the supplemental statistical analysis about genomic distribution of DHSs within the annotated genome and the relationship between DHSs and gene categories.

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Additional file 2:

Additional_table-S1. This table includes confirmed coding transcripts with nearby DHSs (from 2 kb upstream to 2 kb downstream).

Format: TXT Size: 56KB Download file

Additional file 3:

Additional_table-S2. This table includes Pseudogenes with nearby DHSs (from 2 kb upstream to 2 kb downstream).

Format: TXT Size: 6KB Download file