Table 2

Contigs and single reads of Rhagoletis pomonella candidate chemoreceptors†.

Match

CG

aa.

%I

bp

Read/Contig

Source


OR 22c

15377

33

51.0

116

E7OMS0H04JIN70

P

OR 43a

1854

82

53.7

249

E7OMS0H02EYJ4G

H

OR 49a

13158

43

44.0

283

EZ4BI6301E5Z3B*

B

OR 49b

1758

76

65.8

231

C11063 (2)

H

OR 83a

10612

66

51.5

244

E7OMS0H02EEYGV

H

OR 94a

17241

34

52.0

134

E7OMS0H01BOR2 M

B

OR 94b

6679

58

43.1

214

E7OMS0H04H6HYT

P

IR 25a

15627

85

90.0

266

EZ4BI6301FWMUT‡

B

78

77.0

280

EZ4BI6301EI8 MK

B

IR 92a

15685

38

76.0

247

EZ4BI6301FTL6Z

B

GR 43a

1712

80

60.0

242

E7OMS0H02EBJ2S

H

37

56.8

146

EY1FUWY01BWJL1

H

19

85.0

290

EZ4BI6301FFA7L

B

GR 64b

32257

21

66.7

222

E3CVG0K02EHCM3

H


†Contigs and reads matching the same D. melanogaster locus map to different regions of the Drosophila gene. Match is the D. melanogaster locus name for the closest match, CG is the Celera Genome number of the match, aa is the number of amino acids in the single read or contig, %I is the percent aa match between the R. pomonella and D. melanogaster homologous proteins, bp is the base pair length of the single read or contig, Read/Contig is the R. pomonella identifier in our data base, GenBank is the GenBank accession number, and So. is source (Larva, Pupa, Head, or Body). Number of reads assembled in contig is in parenthesis.

*Also matches an EST fragment of an OR from a congener, R. suavis (ABW80750.1) at 100% I; see also GenBank EU204908.1.

‡A second fragment, EZ4BI6301FZM98, was identical but shorter (contained entirely within EZ4BI6301FWMUT).

Schwarz et al. BMC Genomics 2009 10:633   doi:10.1186/1471-2164-10-633

Open Data