Revisiting the missing protein-coding gene catalog of the domestic dog

doi:10.1186/1471-2164-10-62

BMC Genomics
Volume 10

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Derrien T
Thézé J
Vaysse A
André C
Ostrander EA
Galibert F
Hitte C

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Thézé J
Vaysse A
André C
Ostrander EA
Galibert F
Hitte C
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Research article

Revisiting the missing protein-coding gene catalog of the domestic dog

Thomas Derrien¹^,3 , Julien Thézé¹ , Amaury Vaysse¹ , Catherine André¹ , Elaine A Ostrander² , Francis Galibert¹ and Christophe Hitte¹

¹Institut de Génétique et Développement, CNRS UMR6061, Université de Rennes1, 2 Av du Pr. Léon Bernard, 35043 Rennes, France

²Cancer Genetics Branch, National Human Genome Research Institute, National Institutes of Health, 50 South Drive, Bethesda MD 20892, USA

³Centre for Genomic Regulation (CRG), Bioinformatics Program C/Dr. Aiguader, 88 08003 Barcelona, Spain

author email corresponding author email

BMC Genomics 2009, 10:62doi:10.1186/1471-2164-10-62


Published:	4 February 2009

Additional files

Additional file 1:

Human-dog synteny map: Example of human chromosome 5. An example of the synteny map built between human chromosome 5 and the dog genome.

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Additional file 2:

Synteny maps characteristics. The data indicates the main characteristics of the synteny maps.

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Additional file 3:

Characterization of Consensus Orthologous IntervaLs (COILs) containing missing genes. These data file lists the characteristics of the Consensus Orthologous Intervals.

Format: PDF Size: 40KB Download file

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Additional file 4:

List of the 232 new predicted canine genes. This table lists the 232 new gene predictions using the human gene identifiers from Ensembl.

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Additional file 5:

List of the 69 candidate gene losses. This table lists the gene losses using the human gene identifiers from Ensembl.

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Additional file 6:

Gene/species tree reconcilation. These data provide the gene/species tree reconcilation that show the possible duplication events specific of the primates and rodents lineages.

Format: PDF Size: 300KB Download file

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Additional file 7:

Gene-expression profile characterization per tissue with significant over and under representation. The data provided show gene-expression profile characterization per tissue.

Format: PDF Size: 87KB Download file

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