A practical comparison of methods for detecting transcription factor binding sites in ChIP-seq experiments
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* Corresponding author: Laura L Elo laura.elo@utu.fi
- † Equal contributors
BMC Genomics 2009, 10:618 doi:10.1186/1471-2164-10-618
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Cited by
BioMed Central: 6 citations
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Proceedings
Hatice Osmanbeyoglu, Ryan J Hartmaier, Steffi Oesterreich, Xinghua Lu BMC Genomics 2012, 13(Suppl 1):S1 (17 January 2012) |
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Research
Stefan Enroth, Claes R Andersson, Robin Andersson, Claes Wadelius, Mats G Gustafsson, Jan Komorowski Algorithms for Molecular Biology 2012, 7:2 (16 January 2012) |
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Proceedings
Pinpointing transcription factor binding sites from ChIP-seq data with SeqSite Xi Wang, Xuegong Zhang BMC Systems Biology 2011, 5(Suppl 2):S3 (14 December 2011) |
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Method
Naim U Rashid, Paul G Giresi, Joseph G Ibrahim, Wei Sun, Jason D Lieb Genome Biology 2011, 12:R67 (25 July 2011) ZINBA is a method for analyzing peaks in next generation sequencing datasets such as ChIP-seq or DNase-seq
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Software
An integrated ChIP-seq analysis platform with customizable workflows Eugenia G Giannopoulou, Olivier Elemento BMC Bioinformatics 2011, 12:277 (7 July 2011) |
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Question and Answer
Q&A: ChIP-seq technologies and the study of gene regulation Edison T Liu, Sebastian Pott, Mikael Huss BMC Biology 2010, 8:56 (14 May 2010) Edison Liu and colleagues explain in Q&A format how ChIP-seq technology allows investigation of transcriptional regulation on a genomic scale, and what is next.
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