Exploiting proteomic data for genome annotation and gene model validation in Aspergillus niger

doi:10.1186/1471-2164-10-61

BMC Genomics

Volume 10

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Wright JC
Sugden D
Francis-McIntyre S
Riba-Garcia I
Gaskell SJ
Grigoriev IV
Baker SE
Beynon RJ
Hubbard SJ

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Wright JC
Sugden D
Francis-McIntyre S
Riba-Garcia I
Gaskell SJ
Grigoriev IV
Baker SE
Beynon RJ
Hubbard SJ
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Research article

Exploiting proteomic data for genome annotation and gene model validation in Aspergillus niger

James C Wright¹^,2 , Deana Sugden³ , Sue Francis-McIntyre³ , Isabel Riba-Garcia³ , Simon J Gaskell³ , Igor V Grigoriev⁴ , Scott E Baker⁵ , Robert J Beynon¹ and Simon J Hubbard²

¹Dept Veterinary Preclinical Sciences, University of Liverpool, Crown Street, Liverpool, L69 7ZJ, UK

²Faculty of Life Sciences, University of Manchester, Manchester, M13 9PT, UK

³MBCMS, MIB, University of Manchester, Manchester, M13 9PT, UK

⁴DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA

⁵Pacific Northwest National Laboratory, 902 Battelle Blvd, Richland, WA 99354, USA

author email corresponding author email

BMC Genomics 2009, 10:61doi:10.1186/1471-2164-10-61


Published:	4 February 2009

Additional files

Additional File 1:

Proteomic peptide identification data from the APS analysis against the JGI gene models. Lists of all peptide identifications for the APS searches against the JGI predicted gene models are provided, in three different styles. Three worksheets present the data either from the peptide, protein or gene cluster viewpoint.

Format: XLS Size: 1.7MB Download file

This file can be viewed with: Microsoft Excel Viewer