Table 2 |
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|
The 25 most abundant InterPro domains for G. max and P. sojae probesets that cross-hybridized with H. glycines probes. |
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|
G. max |
P. sojae |
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|
InterPro domain |
Number of probesets |
InterPro domain |
Number of probesets |
||
|
|
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|
Ubiquitin |
IPR000626 |
16 |
Sugar transporter superfamily |
IPR005829 |
3 |
|
Extensin-like protein |
IPR003883 |
9 |
EGF-like region |
IPR013032 |
3 |
|
Glutamine amidotransferase |
IPR000583 |
9 |
Peptidase S8 and S53 |
IPR000209 |
2 |
|
ATP-sulfurylase |
IPR002650 |
8 |
HMG-I and HMG-Y, DNA-binding |
IPR000637 |
2 |
|
Histone-fold |
IPR009072 |
6 |
TonB box, N-terminal |
IPR010916 |
2 |
|
Zinc finger, C2H2-type |
IPR007087 |
6 |
Penicillin-binding protein |
IPR012338 |
2 |
|
Major intrinsic protein |
IPR000425 |
5 |
Rhodopsin-like GPCR superfamily |
IPR000276 |
2 |
|
EGF-like region |
IPR013032 |
5 |
DEAD/DEAH box helicase |
IPR001410 |
2 |
|
DNA-binding WRKY |
IPR003657 |
4 |
Prefoldin |
IPR009053 |
2 |
|
Cytochrome c oxidase |
IPR000883 |
4 |
Helix-turn-helix, Fis-type |
IPR002197 |
2 |
|
Cupredoxin |
IPR008972 |
4 |
Zinc finger, C2H2-type |
IPR007087 |
2 |
|
Bet v I allergen |
IPR000916 |
3 |
Ctr copper transporter |
IPR007274 |
1 |
|
Chlorophyll A-B binding protein |
IPR001344 |
3 |
Glycoside hydrolase |
IPR001764 |
1 |
|
Orn/DAP/Arg decarboxylase 2 |
IPR000183 |
3 |
Zinc finger, RING-type |
IPR001841 |
1 |
|
No apical meristem (NAM) protein |
IPR003441 |
3 |
Protein prenyltransferase |
IPR002088 |
1 |
|
IQ calmodulin-binding region |
IPR000048 |
3 |
Whey acidic protein |
IPR008197 |
1 |
|
Zinc finger, RING-type |
IPR001841 |
3 |
Histone-fold |
IPR009072 |
1 |
|
BURP |
IPR004873 |
3 |
Ribosomal protein L10 |
IPR001790 |
1 |
|
Ribosomal protein L7Ae/L30e/S12e/Gadd45 |
IPR004038 |
3 |
Major facilitator superfamily MFS_1 |
IPR011701 |
1 |
|
UspA |
IPR006016 |
3 |
Phosphotransferase KptA/Tpt1 |
IPR002745 |
1 |
|
Ribosomal protein L32e |
IPR001515 |
3 |
Regulator of chromosome condensation |
IPR000408 |
1 |
|
Dehydrin |
IPR000167 |
3 |
Inositol 1, 3, 4-trisphosphate 56-kinase |
IPR008656 |
1 |
|
Thioredoxin-like fold |
IPR012336 |
3 |
Serine carboxypeptidase |
IPR001563 |
1 |
|
Thiamine pyrophosphate enzyme |
IPR011766 |
3 |
Na+ solute symporter |
IPR001734 |
1 |
|
DNA photolyase |
IPR005101 |
2 |
Fructose-bisphosphate aldolase |
IPR000741 |
1 |
|
|
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|
*As defined in Methods **FDR 5% |
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|
Elling et al. BMC Genomics 2009 10:58 doi:10.1186/1471-2164-10-58 |
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