Table 2 |
|||||||||||
|
Summary of best MIRA assembly results for 96 BACs in two sets and four reference BACs included in both sets. |
|||||||||||
|
set |
BAC |
largest contig bp |
sum of contigs >1 kb bp |
N50 for contigs >1 kb bp |
N80 for contigs >1 kb bp |
N90 for contigs >1 kb bp |
avg cov |
0.5-10 kb |
10-50 kb |
50-100 kb |
>100 kb |
|
|
|||||||||||
|
1 |
all (48) |
66,682 |
4,972,546 |
59,359 |
34,037 |
21,204 |
22× |
488 |
61 |
34 |
4 |
|
2 |
all (48) |
58,210 |
5,134,266 |
38,959 |
27,816 |
20,140 |
27× |
546 |
97 |
24 |
3 |
|
|
|||||||||||
|
both |
all (96) |
62,466 |
10,106,812 |
48,945 |
30,926 |
20,671 |
24× |
1.034 |
158 |
58 |
7 |
|
|
|||||||||||
|
1 |
184G09 |
120,316 |
120,316 |
120,316 |
120,316 |
120,316 |
18× |
- |
- |
- |
1 |
|
1 |
259I16 |
74,161 |
125,700 |
74,161 |
11,492 |
8,588 |
19× |
4 |
2 |
1 |
- |
|
1 |
631P08 |
95,649 |
100,966 |
95,649 |
95,649 |
95,649 |
22× |
2 |
- |
1 |
- |
|
1 |
711N16 |
75,684 |
101,682 |
75,684 |
12,600 |
11,564 |
24× |
- |
2 |
1 |
- |
|
|
|||||||||||
|
2 |
184G09 |
91,195 |
121,589 |
91,195 |
28,663 |
28,663 |
25× |
1 |
1 |
1 |
- |
|
2 |
259I16 |
44,395 |
131,950 |
10,249 |
7,210 |
5246 |
14× |
9 |
4 |
- |
- |
|
2 |
631P08 |
52,664 |
102,141 |
26,440 |
18,577 |
18,577 |
24× |
3 |
2 |
1 |
- |
|
2 |
711N16 |
28,312 |
115,582 |
15,998 |
15,998 |
11,527 |
31× |
4 |
5 |
- |
- |
|
|
|||||||||||
|
Steuernagel et al. BMC Genomics 2009 10:547 doi:10.1186/1471-2164-10-547 |
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