Table 6

Differentially expressed miRNAs between non-infected lungs and tracheae (P < 0.05, Q < 0.05 and Ratio > 2)

miRNA

Position on chromosomes

Reads in lungs

Reads in tracheae

Ratio lung/trachea (Normalized)


gga-mir-30c-2

chr3: 85126853-85126924

34

0

-1

gga-mir-19b

chr1: 152248183-152248269

31

0

-

gga-mir-1798

chr20: 9654914-9655009

24

0

-

gga-mir-1456

chrZ: 44167486-44167595

20

0

-

gga-mir-1711

chr12: 17010140-17010207

18

0

-

gga-mir-122-1

chrZ: 649337-649413

17

0

-

gga-mir-203

chr:5: 53206814-53206911

16

0

-

gga-mir-122-2

chrurn_random: 12066796-12066872

14

0

-

gga-mir-1599

chr7: 25926968-25927029

13

0

-

gga-mir-1638

chr5: 58712377- 58712463

12

0

-

gga-mir-1761

chr8: 17523212-17523292

12

0

-

gga-mir-144

chr19: 5824123-5824207

94

2

23.63

gga-mir-146a

chr13: 7555593- 7555691

105

3

17.60

gga-mir-739

241

7

17.31

gga-mir-106

chr4: 3970359-3970439

27

1

13.57

gga-mir-16-1

chr1: 173700351-173700434

107

4

13.45

gga-mir-193a

chr18: 6423770-6423846

26

1

13.07

gga-mir-142-3p

chr19: 496983-497070

49

2

12.32

gga-mir-142-5p

chr19: 496983-497070

49

2

12.32

gga-mir-1729

chr15: 769596-769666

24

1

12.07

gga-mir-20a

chr1: 152248306-152248403

23

1

11.56

gga-mir-21

chr19: 7322072-7322168

771

40

9.69

gga-mir-17-5p

chr1: 152248781-152248865

55

3

9.22

gga-mir-16-2

chr9: 23742791-23742884

67

4

8.42

gga-mir-24

chrZ: 41158175-41158242

344

21

8.24

gga-mir-30e

chr23: 5248414-5248509

112

7

8.04

gga-mir-15c

chr4: 4049055-4049130

46

3

7.71

gga-mir-223

chr:4: 232949-233048

15

1

7.54

gga-mir-29a

chr1: 3236329-3236417

15

1

7.54

gga-mir-29c

chr26: 2511658-2511746

15

1

7.54

gga-mir-17-3p

chr1: 152248781-152248865

55

3

7.37

gga-mir-451

chr19: 5823968-5824036

1287

89

7.27

gga-mir-101

chrZ: 28037874- 28037952

219

16

6.88

gga-mir-126

chr17: 8431742-8431825

250

19

6.61

gga-mir-26a

chr2: 4467516- 4467592

1326

103

6.47

gga-mir-130c

chr19: 7145027-7145120

25

2

6.28

gga-mir-23b

chrZ: 41157406-41157491

285

23

6.23

gga-mir-30c-1

chr23: 5249637-5249725

37

3

6.20

gga-mir-193b

chr14: 759453-759535

23

2

5.78

gga-mir-101-2

chr8: 29051918-29051993

136

12

5.70

gga-mir-15a

chr1: 173700493-173700575

102

9

5.70

gga-let-7f

chr12: 6302497-6302583

8228

781

5.30

gga-mir-27b

chrZ: 41157642-41157738

41

4

5.15

gga-mir-30a-5p

chr3: 85102239- 85102310

785

87

4.54

gga-mir-30a-3p

chr3: 85102239- 85102310

656

76

4.34

gga-mir-16c

chr4: 4048689- 4048759

65

8

4.08

gga-mir-181a-1

chr8: 2001561-2001664

366

49

3.76

gga-mir-200b

chr21: 2585642-2585726

72

10

3.62

gga-mir-22

chr19: 5352096- 5352195

43

6

3.60

gga-let-7a-3

chr1: 73421272-73421347

3193

468

3.43

gga-mir-146c

chr4: 92169271- 92169399

243

36

3.39

gga-mir-146b

chr6: 24570060-24570164

691

107

3.25

gga-mir-181a-2

chr17: 10218497-10218587

283

45

3.16

gga-let-7k

chr26: 1442897-1442979

327

54

3.04

gga-mir-15b

chr9: 23742966- 23743056

41

7

2.94

gga-let-7a-2

chr24: 3380993-3381064

3113

540

2.89

gga-mir-99a

chr1: 102424333-102424413

92

16

2.89

gga-mir-1b

chr23: 4663912-4663975

63

11

2.88

gga-mir-199-1

chr17: 5667150-5667243

541

95

2.86

gga-mir-199-2

chr8: 4732773-4732880

541

95

2.86

gga-let-7a-1

chr12: 6302911-6303000

3020

532

2.85

gga-let-7a-3

chr1: 73421272-73421347

1506

266

2.85

gga-let-7j

chr26: 1442697-1442779

2938

522

2.83

gga-mir-221

chr1: 114218926-114219024

129

23

2.82

gga-mir-128-1

chr7: 3222815032228231

43

8

2.70

gga-mir-125b

chr1: 102457647-102457736

119

24

2.49

gga-mir-30d

chr2: 148337263-148337326

344

68

2.47

gga-mir-103-2

chr4: 91906889-91906971

243

51

2.40

gga-let-7i

chr1: 34895687-34895770

633

136

2.34

gga-mir-107

chr6: 20487964-20488044

77

17

2.28

gga-let-7c

chr1: 102425086-102425169

3059

679

2.26

gga-mir-456

chr3: 32679710-32679821

122

28

2.19

gga-let-7g

chr12: 2809078-2809160

1623

373

2.19

gga-mir-10a

chrun_random: 379304-379377

598

139

2.16

gga-mir-181b-1

chr8: 2001750-2001838

106

25

2.13

gga-mir-181b-2

chr17: 10220137- 10220221

89

21

2.13

gga-mir-34b

chr24: 5684900-5684983

337

82

2.07

gga-mir-206

chr3: 110390439-110390514

9

88

0.05


Note: 1 Specifically expressed in non-infected lungs.

Wang et al. BMC Genomics 2009 10:512   doi:10.1186/1471-2164-10-512

Open Data