Table 5

Differentially expressed miRNAs between infected lungs and tracheae (P < 0.05, Q < 0.05 and Ratio > 2)

miRNA

Position on chromosomes

Reads in lungs

Reads in tracheae

Ratio lung/trachea (Normalized)


gga-mir-1599

chr7: 25926968-25927029

48

0

-1

gga-mir-1612

chr9: 6031748-6031831

39

0

-

gga-mir-1701

chr4: 82234261-82234337

27

0

-

gga-mir-1458

chr9: 11743528-11743637

25

0

-

gga-mir-1793

chr9: 25115521-25115617

23

0

-

gga-mir-181b-2

chr17: 10220137- 10220221

20

0

-

gga-mir-1416

chrZ: 34596479-34596567

17

0

-

gga-mir-7-1

chrZ: 8107831-8107901

16

0

-

gga-mir-7b

chr1: 73422101-73422185

15

0

-

gga-mir-1638

chr5: 58712377- 58712463

13

0

-

gga-mir-144

chr19: 5824123-5824207

11

0

-

gga-mir-1761

chr8: 17523212-17523292

9

0

-

gga-mir-1576

chr13:18532632-18532726

8

0

-

gga-mir-1814

chr4: 61722590-61722663

8

0

-

gga-mir-1452

chrZ: 8107831-8107901

7

0

-

gga-mir-1815

chr6: 29566734-29566810

7

0

-

gga-mir-122-1

chrZ: 649337-649413

6

0

-

gga-mir-122-2

chrurn_random: 12066796-12066872

6

0

-

gga-mir-1636

chr15: 4729959-4730046

6

0

-

gga-mir-1659

chr7: 14764187-14764287

6

0

-

gga-mir-1786

chr14: 7801714-7801822

6

0

-

gga-mir-218-1

chr4: 77774698-77774806

5

0

-

gga-mir-218-3

5

0

-

gga-mir-7-2

chr10: 14823525-14823623

5

0

-

gga-mir-1467

chr2: 141373919-141374028

4

0

-

gga-mir-1630

chr9: 1883593-1883649

4

0

-

gga-mir-1816

chr2: 90603851-90603955

4

0

-

gga-mir-7-3

chr28: 4436025-4436119

4

0

-

gga-mir-10a

chrun_random: 379304-379377

86

11

19.81

gga-mir-451

chr19: 5823968-5824036

93

14

16.83

gga-mir-184

chr10: 22146245-22146318

11

3

9.29

gga-mir-193b

chr14: 759453-759535

11

3

9.29

gga-mir-181a-2

chr17: 10218497-10218587

57

18

8.02

gga-mir-205a

chr26: 2896047-2896142

6

2

7.60

gga-mir-92

chr1: 152248070-152248070

42

24

4.43

gga-mir-99a

chr1: 102424333-102424413

23

14

4.16

gga-mir-126

chr17: 8431742-8431825

25

17

3.73

gga-let-7i

chr1: 34895687-34895770

177

123

3.65

gga-mir-146b

chr6: 24570060-24570164

102

78

3.31

gga-mir-30d

chr2: 148337263-148337326

60

46

3.30

gga-mir-181a-1

chr8: 2001561-2001664

65

51

3.23

gga-let-7b

chr1: 73422101-73422185

2008

1761

2.89

gga-mir-206

chr3: 110390439-110390514

101

95

2.69

gga-mir-148a

chr2: 32053543-32053610

114

116

2.49

gga-mir-30a-5p

chr3: 85102239- 85102310

68

74

2.33

gga-let-7k

chr26: 1442897-1442979

53

58

2.32

gga-mir-30a-3p

chr3: 85102239- 85102310

58

66

2.23

gga-mir-30e

chr23: 5248414-5248509

20

23

2.20

gga-let-7g

chr12: 2809078-2809160

342

413

2.10

gga-mir-456

chr3: 32679710-32679821

30

37

2.05

gga-mir-103-2

chr4: 91906889-91906971

65

82

2.01

gga-mir-1b

chr23: 4663912-4663975

10

66

0.38

gga-mir-34b

chr24: 5684900-5684983

112

870

0.37

gga-mir-34c

chr24: 5685637-5685710

78

540

0.37

gga-mir-499

chr20: 2599334-2599424

13

154

0.21

gga-mir-1a-1

chr20: 8107831- 8107901

551

10438

0.13

gga-mir-1a-2

chr2: 105673483- 10567356

593

11423

0.13


Note: 1 Specifically expressed in infected lungs.

Wang et al. BMC Genomics 2009 10:512   doi:10.1186/1471-2164-10-512

Open Data