Table 4

Differentially expressed miRNAs between infected and non-infected tracheae (P < 0.05, Q < 0.05 and Ratio > 2)

miRNA

Position on chromosomes

Reads in infected

Reads in non-infected

Ratio infected/non-infected (Normalized)


gga-mir-1a-2

chr2: 105673483- 10567356

11423

441

9.34

gga-mir-1a-1

chr20: 8107831- 8107901

10438

405

9.29

gga-mir-455-3p

chr17:6021890-6021975

29

2

5.23

gga-mir-455-5p

chr17:6021890-6021975

29

2

5.23

gga-mir-34b

chr24: 5684900-5684983

870

82

3.82

gga-mir-499

chr20: 2599334-2599424

154

15

3.70

gga-mir-34c

chr24: 5685637-5685710

540

64

3.04

gga-mir-140

chr11: 21030641-21030735

2334

383

2.20

gga-mir-1b

chr23: 4663912-4663975

66

11

2.16

gga-mir-456

chr3: 32679710-32679821

37

28

0.48

gga-mir-125b

chr1: 102457647-102457736

31

24

0.47

gga-mir-148a

chr2: 32053543-32053610

116

94

0.44

gga-let-7b

chr1: 73422101-73422185

1761

1460

0.43

gga-mir-181a-1

chr8: 2001561-2001664

59

49

0.43

gga-mir-146c

chr4: 92169271- 92169399

42

36

0.42

gga-mir-181a-2

chr17: 10218497-10218587

51

45

0.41

gga-let-7g

chr12: 2809078-2809160

413

373

0.40

gga-mir-206

chr3: 110390439-110390514

95

88

0.39

gga-mir-222

chr1: 114216027-114216124;

chr1: 114218422-114218519

14

13

0.39

gga-let-7k

chr26: 1442897-1442979

58

54

0.39

gga-mir-181b-2

chr17: 10220137- 10220221

20

21

0.34

gga-let-7i

chr1: 34895687-34895770

123

136

0.33

gga-mir-126

chr17: 8431742-8431825

17

19

0.32

gga-mir-99a

chr1: 102424333-102424413

14

16

0.32

gga-mir-30a-3p

chr3: 85102239- 85102310

66

76

0.31

gga-mir-30a-5p

chr3: 85102239- 85102310

74

87

0.31

gga-mir-146b

chr6: 24570060-24570164

78

107

0.26

gga-mir-181b-1

chr8: 2001750-2001838

18

25

0.26

gga-mir-30d

chr2: 148337263-148337326

46

68

0.24

gga-mir-100

chr21: 3372894-3372973

25

41

0.22

gga-mir-92

chr1: 152248070-152248070

24

40

0.22

gga-mir-15a

chr1: 173700493-173700575

3

9

0.12

gga-mir-451

chr19: 5823968-5824036

14

89

0.06

gga-mir-10a

chrun_random: 379304-379377

11

139

0.03

gga-mir-1612

chr9: 6031748-6031831

0

9

-1

gga-mir-1458

chr9: 11743528-11743637

0

7

-


Note: 1 Specifically expressed in non-infected tracheae.

Wang et al. BMC Genomics 2009 10:512   doi:10.1186/1471-2164-10-512

Open Data