Table 5 |
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|
Average PU for the predicted octamer elements surrounded by ± 30 nt context analyzed in various segments as shown in Figure 2. |
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|
Elements |
Next to 5'SS |
Next to 3'SS |
Inside intron |
Inside exon |
||||
|
|
||||||||
|
Number |
Average PU |
Number |
Average PU |
Number |
Average PU |
Number |
Average PU |
|
|
|
||||||||
|
5'SS ISEs |
3,946 |
0.100/0.100 |
3,954 |
0.185/0.191 |
4,014 |
0.189/0.196 |
4,017 |
0.148/0.154 |
|
|
||||||||
|
5'SS ISSs |
1,361 |
0.174/0.184 |
700 |
0.241/0.247 |
3,993 |
0.182/0.173 (P = 0.0064) |
1,744 |
0.157/0.144 |
|
|
||||||||
|
3'SS ISEs |
3,930 |
0.165/0.165 |
4,061 |
0.205/0.206 |
3,989 |
0.190/0.187 |
3,984 |
0.182/0.174 |
|
|
||||||||
|
3'SS ISSs |
3,954 |
0.144/0.163 |
3,987 |
0.120/0.127 |
4,039 |
0.194/0.185 (P = 0.0063) |
4,050 |
0.133/0.132 |
|
|
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|
All Other elements |
4,004 |
0.128/0.130 |
3,966 |
0.163/0.160 |
4,053 |
0.152/0.146 (P = 0.0083) |
4,024 |
0.134/0.123 |
|
|
||||||||
|
We classified the predicted elements surrounded by ± 30 nt context according to segments of their location. The mean PU values calculated according to [2] for wild type and dinucleotide reshuffled contexts are followed by significant P-values obtained with the Wilcoxon two-sided rank-sum tests. Only the P-values rejecting the null hypotheses (P < 1%) that the distribution is similar in the two groups of PU values are shown. |
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|
Churbanov et al. BMC Genomics 2009 10:508 doi:10.1186/1471-2164-10-508 |
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