Research article
Cell wall biogenesis of Arabidopsis thaliana elongating cells: transcriptomics complements proteomics
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* Corresponding author: Elisabeth Jamet jamet@scsv.ups-tlse.fr
1 Surfaces cellulaires et Signalisation chez les Végétaux, UMR 5546 CNRS - UPS -Université de Toulouse, Pôle de Biotechnologie Végétale, 24 chemin de Borde-Rouge, BP 42617 Auzeville, 31326 Castanet-Tolosan, France
2 UMR INRA 1165 - CNRS 8114 - UEVE, 2 rue Gaston Crémieux, CP 5708, 91057 Evry, France
3 Department of Botany, Govt. Post-Graduate College, 23200 Mardan, Pakistan
BMC Genomics 2009, 10:505 doi:10.1186/1471-2164-10-505
Published: 31 October 2009Additional files
Additional file 1:
Cell Wall Genes (CWGs) with detectable levels of transcripts in 5- or 11-day-old hypocotyls. The data provided represent the CWGs with their level of transcripts and statistical analysis.
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Additional file 2:
Cell Wall Genes (CWGs) with high levels of transcripts in either 5- or 11-day-old hypocotyls. The data provided represent the CWGs having high levels of transcripts.
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Additional file 3:
Secretory Pathway Genes (SPGs) with moderate or high levels of transcripts in 5- and 11-day-old etiolated hypocotyls. The data provided represent the levels of transcripts of SPGs and the corresponding statistical analyses.
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Additional file 4:
Secretory Pathway Genes (SPGs) with modulated levels of transcripts in 5- and 11-day-old etiolated hypocotyls. The data provided represent the transcript levels of SPGs differentially expressed between the two samples.
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Additional file 5:
Proteins extracted and identified by mass spectrometry from purified cell walls of 5- and 11-day-old etiolated hypocotyls of A. thaliana. The data provided represent the levels of transcripts of the genes encoding the proteins identified by proteomics.
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Additional file 6:
RT-PCR analysis of the transcripts of some genes encoding CWPs identified through proteomics. The data provided represent the controls of microarray data by quantitative RT-PCR for some selected genes.
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Additional file 7:
Nucleotide primers used for PCR amplifications. The sequences of the oligonucleotide primers used for PCR analysis are listed in this file.
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