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Open Access Highly Accessed Research article

Analysis of genomic signatures in prokaryotes using multinomial regression and hierarchical clustering

Jon Bohlin1*, Eystein Skjerve1 and David W Ussery2

Author Affiliations

1 Norwegian School of Veterinary Science, P.O. Box 8146 Dep., N-0033 Oslo, Norway

2 Center for Biological Sequence Analysis, Technical University of Denmark, DK-2800 Lyngby, Denmark

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BMC Genomics 2009, 10:487  doi:10.1186/1471-2164-10-487

Published: 21 October 2009

Additional files

Additional file 1:

Genomic signature based cluster diagram. JPG file containing 867 labelled prokaryotic DNA sequences compared pair-wise using hexanucleotide-based genomic signatures, and clustered using hierarchical clustering.

Format: JPEG Size: 13.9MB Download file

Open Data

Additional file 2:

Data file. Excel file containing all 867 prokaryotic chromosomes and plasmids larger than 100 kb along with the corresponding list of genomic properties and phyla.

Format: XLS Size: 233KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data