Table 3

Quality estimation of turkey short read contigs based on alignment to the chicken genome.

frequency1

percentage mapping to chicken2



size

contigs

BES

uniquely

with secondary hit

multiple hits

total


50-70

124480

0

47

-

2

-

1

-

50

-

75-100

38382

1

53

0

2

0

1

0

56

0

100-150

25808

156

73

69

1

4

0

4

74

77

150-200

8878

226

69

78

1

6

0

4

70

88

200-300

6453

835

63

82

1

3

0

3

64

88

300-400

2372

2428

51

86

1

4

0

1

52

90

400-500

1192

6664

40

87

1

3

0

2

40

92

500-600

682

8509

30

88

1

3

0

2

31

93

600-800

688

1510

18

88

0

4

0

2

18

93

800-1000

308

54

11

83

0

0

0

2

11

85

>= 1000

380

4

6

80

1

0

0

20

7

100


1 frequency in which contigs and BES (in italics) occurred per size category

2 per size category percentage of contigs and BES (in italics) that mapped to the chicken genome

Kerstens et al. BMC Genomics 2009 10:479   doi:10.1186/1471-2164-10-479

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