Table 3 |
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|
Summary statistics of Ka and Ks for 20 loci with multiple SNPs |
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|
Locus |
SFP sequence ID |
SGN unigene ID1 |
Chromosome |
No. of SNPs |
Ka |
Ks |
Ka/Ks |
SGN annotation |
|
|
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|
Le011123 |
Le011123 |
SGN-U598411 |
1 |
4 (3)2 |
0.009 |
0.016 |
0.579 |
dehydration-responsive related protein |
|
Le006895 |
Le006895 |
SGN-U569640 |
2 |
4 (4) |
0.009 |
0.006 |
1.412 |
cytochrome P450 76C2 |
|
Rcr3 |
Le013093 |
SGN-U331451 |
2 |
10 (4) |
0.009 |
0.013 |
0.692 |
cysteine protease (Rcr3) |
|
Le013887 |
Le013887 |
SGN-U600765 |
2 |
7 (4) |
0.008 |
0.119 |
0.063 |
unknown |
|
Le002348 |
Le002348 |
SGN-U588569 |
3 |
4 (4) |
0.007 |
0.051 |
0.137 |
lipid transfer protein 6 (LTP6) |
|
LEOH8 |
Le009961 |
SGN-U313561 |
3 |
4 (4) |
0.002 |
0.018 |
0.111 |
plasma membrane intrinsic protein 2A (PIP2A) |
|
Le013904 |
Le013904 |
SGN-U571948 |
3 |
4 (4) |
0.016 |
0.000 |
> 1 |
unknown |
|
Le001310 |
Le001310 |
SGN-U312733 |
4 |
4 (1) |
0.010 |
0.049 |
0.203 |
ribosomal protein L17 |
|
Le006853 |
Le006853 |
SGN-U585308 |
4 |
5 (4) |
0.007 |
0.055 |
0.121 |
oligopeptide transporter OPT protein |
|
Le013946 |
Le013946 |
SGN-U342731 |
4 |
6 (6) |
0.016 |
0.000 |
> 1 |
fertility restorer-like protein |
|
LEOH38 |
Le003743 |
SGN-U314789 |
5 |
5 (5) |
0.007 |
0.011 |
0.636 |
ripening regulated protein (DDTFR6/A) |
|
Le004790 |
Le004790 |
SGN-U566816 |
5 |
4 (3) |
0.015 |
0.000 |
> 1 |
ubiquinol-cytochrome C chaperone protein |
|
Le007111 |
Le007111 |
SGN-U577041 |
5 |
4 (4) |
0.060 |
0.000 |
> 1 |
unknown |
|
Le009852 |
Le009852 |
SGN-U577041 |
5 |
8 (2) |
0.000 |
0.059 |
0.000 |
unknown |
|
LEOH35 |
Le003313 |
SGN-U318485 |
9 |
8 (8) |
0.014 |
0.023 |
0.609 |
photosystem II reaction centre W (PsbW) |
|
LEOH31 |
Le004579 |
SGN-U317091 |
9 |
10 (9) |
0.007 |
0.057 |
0.123 |
putative chlorophyll synthetase |
|
Le000343 |
Le000343 |
SGN-U578047 |
unknown |
4 (4) |
0.000 |
0.000 |
0.000 |
metallothionein-like protein type 2 |
|
Le005230 |
Le005230 |
SGN-U585097 |
unknown |
4 (3) |
0.009 |
0.033 |
0.280 |
nuclear transport factor 2 (NTF2) |
|
Le006861 |
Le006861 |
SGN-U578820 |
unknown |
18 (4) |
0.004 |
0.014 |
0.286 |
phosphatidylinositol-4-phosphate 5-kinase |
|
Le011957 |
Le011957 |
SGN-U589331 |
unknown |
4 (4) |
0.015 |
0.016 |
0.904 |
phosphoinositide-specific phospholipase C |
|
|
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|
1SOL Genomics Network (SGN:http://solgenomics.net/ webcite) unigene ID 2Number in parenthesis indicates the number of SNPs in an open reading frame (OFR) of each locus |
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|
Sim et al. BMC Genomics 2009 10:466 doi:10.1186/1471-2164-10-466 |
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