Table 3

Summary statistics of Ka and Ks for 20 loci with multiple SNPs

Locus

SFP sequence ID

SGN unigene ID1

Chromosome

No. of SNPs

Ka

Ks

Ka/Ks

SGN annotation


Le011123

Le011123

SGN-U598411

1

4 (3)2

0.009

0.016

0.579

dehydration-responsive related protein

Le006895

Le006895

SGN-U569640

2

4 (4)

0.009

0.006

1.412

cytochrome P450 76C2

Rcr3

Le013093

SGN-U331451

2

10 (4)

0.009

0.013

0.692

cysteine protease (Rcr3)

Le013887

Le013887

SGN-U600765

2

7 (4)

0.008

0.119

0.063

unknown

Le002348

Le002348

SGN-U588569

3

4 (4)

0.007

0.051

0.137

lipid transfer protein 6 (LTP6)

LEOH8

Le009961

SGN-U313561

3

4 (4)

0.002

0.018

0.111

plasma membrane intrinsic protein 2A (PIP2A)

Le013904

Le013904

SGN-U571948

3

4 (4)

0.016

0.000

> 1

unknown

Le001310

Le001310

SGN-U312733

4

4 (1)

0.010

0.049

0.203

ribosomal protein L17

Le006853

Le006853

SGN-U585308

4

5 (4)

0.007

0.055

0.121

oligopeptide transporter OPT protein

Le013946

Le013946

SGN-U342731

4

6 (6)

0.016

0.000

> 1

fertility restorer-like protein

LEOH38

Le003743

SGN-U314789

5

5 (5)

0.007

0.011

0.636

ripening regulated protein (DDTFR6/A)

Le004790

Le004790

SGN-U566816

5

4 (3)

0.015

0.000

> 1

ubiquinol-cytochrome C chaperone protein

Le007111

Le007111

SGN-U577041

5

4 (4)

0.060

0.000

> 1

unknown

Le009852

Le009852

SGN-U577041

5

8 (2)

0.000

0.059

0.000

unknown

LEOH35

Le003313

SGN-U318485

9

8 (8)

0.014

0.023

0.609

photosystem II reaction centre W (PsbW)

LEOH31

Le004579

SGN-U317091

9

10 (9)

0.007

0.057

0.123

putative chlorophyll synthetase

Le000343

Le000343

SGN-U578047

unknown

4 (4)

0.000

0.000

0.000

metallothionein-like protein type 2

Le005230

Le005230

SGN-U585097

unknown

4 (3)

0.009

0.033

0.280

nuclear transport factor 2 (NTF2)

Le006861

Le006861

SGN-U578820

unknown

18 (4)

0.004

0.014

0.286

phosphatidylinositol-4-phosphate 5-kinase

Le011957

Le011957

SGN-U589331

unknown

4 (4)

0.015

0.016

0.904

phosphoinositide-specific phospholipase C


1SOL Genomics Network (SGN:http://solgenomics.net/ webcite) unigene ID

2Number in parenthesis indicates the number of SNPs in an open reading frame (OFR) of each locus

Sim et al. BMC Genomics 2009 10:466   doi:10.1186/1471-2164-10-466

Open Data