Table 2

Mapping bovine CHORI-240 BAC-end sequences to the bovine genome

BAC end sequences

Total

%

correct

position

consistent

position

correct and consistent

position

inconsistent

positions

% inconsistent

expected orientations and within size limit (tail-to-tail)

55,572

40%

3,826

46,295

50,121

2,932

5.3%

conflicting orientations and/or outside size limit same chromosome

8,666

6.2%

340

6,757

7,097

938

11%

two different chromosomes (breaks)

9,443¹

6.8%

316

6,904

7,220

1,803

19%

only one BAC end placed on genome (unpaired)

64,996

47%

3,861

44,171

48,032

9,404

14%

Total

138,677

100%

8,343

104,127

112,470

15,077

11%

¹does not include BACs with both end sequences mapped to the unknown chromosome

Ratnakumar et al. BMC Genomics 2009 10:46   doi:10.1186/1471-2164-10-46