BMC Genomics

official impact factor 4.21

Open Access Research article

Comparative SNP diversity among four Eucalyptus species for genes from secondary metabolite biosynthetic pathways

Carsten Külheim1*, Suat Hui Yeoh1, Jens Maintz1,2, William J Foley1 and Gavin F Moran1

Author Affiliations

1 Research School of Biology, Australian National University, 116 Daley Road, Canberra, Australia

2 Department of Botany, Ruhr Universität, Bochum, German

For all author emails, please log on.

BMC Genomics 2009, 10:452 doi:10.1186/1471-2164-10-452

Published: 24 September 2009

Additional files

Additional file 1:

Table of the gene copy number from A. thaliana, O. sativa, P. trichocarpa and V. vinifera. Values estimated from BLAST searches and searches with the gene names. Values in brackets are unconfirmed genes or pseudogenes. The shading of the gene name indicates genes with a high copy number.

Format: DOC Size: 46KB Download file

This file can be viewed with: Microsoft Word Viewer

Open Data

Additional file 2:

pN/pS for each gene and species studied. This file shows the values for non-synonymous SNPs per non-synonymous site divided by synonymous SNPs per synonymous sites (pN/pS) for each species

Format: DOC Size: 50KB Download file

This file can be viewed with: Microsoft Word Viewer

Open Data

Additional file 3:

Primer list for the set of 23 genes used in this study. This file shows the primers used for each gene, the EST used for designing the primer and the length of each fragment amplified by the primer pair.

Format: XLS Size: 26KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data