Table 1 |
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|
Secondary Structure Matching (SSM) parameters |
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|
Query |
PDB code |
RMSD (Å) |
Q-score |
Z-score |
|
|
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|
PFF0015c_3 |
1.07 |
0.657 |
10 |
|
|
|
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|
PFL2660w_5 |
3.54 |
0.190 |
1.7 |
|
|
|
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|
Root mean square deviation (RMSD) is calculated between the C-alpha atoms of the matched residues in the best 3D superimposition of the query and target structures. The percentage of identity (%ID) is the number of identical amino acids in the structural alignment (%ID is not given in table). Q-score is the ratio between RMSD and the number of aligned amino acids and is considered as a measure of quality of alignment (for identical structure Q = 1). Z-score provides the statistical significance of a fold match in terms of standard Gaussian statistics, the higher Z-score; the higher is the significance of the match |
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|
Bultrini et al. BMC Genomics 2009 10:445 doi:10.1186/1471-2164-10-445 |
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