Table 4 |
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|
Comparison of replacements among bacteria with pepsin homologues |
||||||
|
Family |
Shewanella amazonensis |
Shewanella loihica |
Shewanella sediminis |
Colwellia psychrerythraea |
Sinorhizobium medicae |
Marinomonas sp. MWYL1 |
|
|
||||||
|
A1 (pepsin) |
55.5 |
42.4 |
43.6 |
41.3 |
17.1 |
15.5 |
|
A8 (signal peptidase 2) |
70.8 |
72.4 |
67.6 |
48.3 |
35.8 |
46.4 |
|
S16 (endpeptidase Clp) |
89.0 |
90.9 |
89.9 |
78.1 |
61.6 |
67.2 |
|
|
||||||
|
The protein sequences from Shewanella denitrificans were compared with orthologous protein sequences from other bacteria. Sequences were aligned with Muscle [30] and percentage identities calculated using Alistat http://hmmer.janelia.org/ webcite. |
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|
Rawlings and Bateman BMC Genomics 2009 10:437 doi:10.1186/1471-2164-10-437 |
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