Table 2 |
||||
|
List of rice homologues of drought responsive Musa transcripts that co-localise with known QTLs for 'drought' and 'cold' in rice. |
||||
|
Rice Abiotic Stress QTLs |
Rice Homologues of Drought Responsive Musa transcripts |
Arabidopsis Accession |
Normalized Expression levels |
|
|
|
||||
|
> 2 fold expressed genes |
Description |
|||
|
|
||||
|
QTL-1: cold tolerance "AQAV003" Chromosome 1 5556378 -7443721 bp Os01g10504 - Os1g13360 |
Os01g10490* |
putatitve protein meiosis 5 |
AT2G42840.1 |
2.56 |
|
|
||||
|
Os01g10700 |
D-mannose binding lectin family protein |
AT4G32300.1 |
2.04 |
|
|
|
||||
|
Os01g10830 |
carnitine racemase like protein, putative, expressed |
AT4G14430.1 |
2.19 |
|
|
|
||||
|
Os01g11010 |
peptide-N4-asparagine amidase A, putative, expressed |
AT3G14920.1 |
0.50 |
|
|
|
||||
|
Os01g11020 |
conserved hypothetical protein |
AT2G29210.1 |
2.14 |
|
|
|
||||
|
Os01g11120 |
expressed protein |
2.03 |
||
|
|
||||
|
Os01g11250 |
potassium channel KAT1, putative, expressed |
AT5G46240.1 |
0.24 |
|
|
|
||||
|
Os01g11340* |
CYP710A1, putative, expressed |
AT2G34500.1 |
2.53 |
|
|
|
||||
|
Os01g11620* |
esterase precursor, putative, expressed |
AT5G26780.1 |
0.15 |
|
|
|
||||
|
Os01g11720 |
Transposable element protein, putative, Transposase_24 |
0.40 |
||
|
|
||||
|
Os01g12070 |
endoglucanase 1 precursor, putative, expressed |
AT1G64390.1 |
0.49 |
|
|
|
||||
|
Os01g12280 |
protein dimerization, putative, expressed |
AT1G79740.1 |
2.34 |
|
|
|
||||
|
Os01g12310 |
histone deacetylase, putative |
AT4G38130.1 |
2.36 |
|
|
|
||||
|
Os01g12330 |
expressed protein |
AT5G59950.2 |
2.42 |
|
|
|
||||
|
Os01g12570 |
3-methyl-2-oxobutanoate hydroxymethyltransferase, putative, expressed |
AT3G61530.1 |
0.40 |
|
|
|
||||
|
Os01g12740 |
cytochrome P450 71A1, putative, expressed |
AT3G48290.1 |
2.27 |
|
|
|
||||
|
Os01g12810 |
leaf protein, putative, expressed |
AT5G25630.1 |
4.02 |
|
|
|
||||
|
Os01g13050 |
hypothetical protein |
AT1G30900.1 |
2.56 |
|
|
|
||||
|
QTL-2: Drought susceptibility "AQA045/CQ148" Chromosome 4 413619452 - 13619571 bp Os04g23890 |
Os04g23890 |
phototropin-1, putative, expressed |
AT5G58140.3 |
2.23 |
|
|
||||
|
QTL-3: drought tolerance "AQAN001" Chromosome 5 27321395 - 28590239 bp Os05g47820 - Os05g50000 |
Os05g47940 |
transposon protein, putative, unclassified, expressed |
AT3G19430.1 |
2.15 |
|
|
||||
|
Os05g47980 |
ATP synthase beta chain, mitochondrial precursor, putative, expressed |
AT5G08670.1 |
2.12 |
|
|
|
||||
|
Os05g48010 |
anthocyanin regulatory C1 protein, putative, expressed |
AT5G57620.1 |
0.27 |
|
|
|
||||
|
Os05g48290 |
T-complex protein 1 subunit beta, putative, expressed |
AT5G20890.1 |
4.42 |
|
|
|
||||
|
Os05g48320 |
60S ribosomal protein L37a, putative, expressed |
AT3G60245.1 |
2.30 |
|
|
|
||||
|
Os05g48600 |
galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1 putative, expressed |
AT1G27600.1 |
0.44 |
|
|
|
||||
|
Os05g48750 |
3-deoxy-manno-octulosonate cytidylyltransferase, putative, expressed |
AT1G53000.1 |
2.00 |
|
|
|
||||
|
Os05g48790 |
expressed protein |
2.28 |
||
|
|
||||
|
Os05g49070 |
expressed protein |
AT1G71180.1 |
0.27 |
|
|
|
||||
|
Os05g49160* |
negatively light-regulated protein, putative, expressed |
AT5G64130.1 |
2.82 |
|
|
|
||||
|
Os05g49320 |
50S ribosomal protein L12-1, chloroplast precursor, putative, expressed |
AT3G27830.1 |
2.69 |
|
|
|
||||
|
Os05g49510 |
expressed protein |
AT2G40070.1 |
2.45 |
|
|
|
||||
|
Os05g49530 |
F-box domain containing protein |
AT1G16610.1 |
0.31 |
|
|
|
||||
|
Os05g49610 |
expressed protein |
AT5G62990.1 |
0.22 |
|
|
|
||||
|
Os05g49880 |
malate dehydrogenase, mitochondrial precursor, putative, expressed |
AT1G53240.1 |
2.03 |
|
|
|
||||
|
Os05g49910 |
expressed protein |
AT2G25605.1 |
0.40 |
|
|
|
||||
|
QTL-4: cold tolerance AQDU003 Chromosome 8 ]20519931 - 21012373 bp Os08g33190 - Os08g33790 |
Os08g33390 |
HECT domain and RCC1-like domain-containing protein 2, putative, expressed |
AT5G16040.1 |
2.21 |
|
|
||||
|
QTL-5: cold tolerance "CQP8" Chromosome 11 1491600-1492616 bp Os11g03794 |
Os11g03794 |
Aladin, putative, expressed |
AT3G56900.1 |
3.10 |
|
|
||||
|
QTL-6: drought susceptibility "AQA046/CQA149" Chromosome 12 26017330-27488769 bp Os12g42020-Os12g44490 |
Os12g42180 |
50S ribosomal protein L14, putative, expressed |
AT5G46160.1 |
2.05 |
|
|
||||
|
Os12g42250 |
expressed protein |
AT1G68360.1 |
0.43 |
|
|
|
||||
|
Os12g42380* |
expressed protein |
AT1G31810.1 |
0.38 |
|
|
|
||||
|
Os12g42510 |
expressed protein |
AT1G31810.1 |
0.38 |
|
|
|
||||
|
Os12g42560 |
hypothetical protein |
0.46 |
||
|
|
||||
|
Os12g42570 |
expressed protein |
AT3G11760.1 |
0.22 |
|
|
|
||||
|
Os12g42884 |
5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferase, putative, expressed |
AT5G17920.1 |
2.31 |
|
|
|
||||
|
Os12g43400 |
hypothetical protein |
2.06 |
||
|
|
||||
|
Os12g43590 |
FAD binding protein, putative, expressed |
AT5G49555.1 |
0.50 |
|
|
|
||||
|
Os12g43620 |
helix-loop-helix DNA-binding domain containing protein |
AT4G37850.1 |
2.36 |
|
|
|
||||
|
Os12g44010 |
purple acid phosphatase precursor, putative, expressed |
AT2G16430.2 |
0.50 |
|
|
|
||||
|
Os12g44070 |
protein nitrate and chloride transporter, putative, expressed |
AT2G39210.1 |
2.07 |
|
|
|
||||
|
Os12g44270 |
glycine-rich cell wall protein precursor, putative |
AT3G22800.1 |
0.44 |
|
|
|
||||
|
Os12g44310 |
9,10-9,10 carotenoid cleavage dioxygenase 1, putative, expressed |
AT3G63520.1 |
2.43 |
|
|
|
||||
|
Os12g44360 |
sodium/hydrogen exchanger 7, putative, expressed |
AT1G14660.1 |
5.71 |
|
|
|
||||
|
* - indicates genes common to dehydration stress experiments in rice seedlings of Tyagi et al)[48]. Data obtained from the Gene Expression Omnibus (GEO) database at the NCBI website, accession number: GSE 6901 Each QTL described by it's Gramene website QTL accession id, rice map position and the range of genes underlying that QTL. |
||||
|
Davey et al. BMC Genomics 2009 10:436 doi:10.1186/1471-2164-10-436 |
||||
