Additional file 5.

miRNAs among the top 100 most expressed with seed matching sites most enriched in the 3'UTRs of sorted genes. 3'UTR words - words enriched in 3'UTRs of sorted genes. Complementary miRNA - miRNA with seed region (positions 2..8) complementary to the enriched word. miRNA expression trend - average trend of miRNA expression category and cluster as defined by differential expression analysis and classified by MCL where applicable (see Methods): steady-state - highly expressed miRNAs (among the top 30 most highly expressed) showing no change of abundance between any timepoints; decreasing - miRNAs from an expression cluster with average trend decreasing between all consecutive timepoints; increasing - miRNAs from an expression cluster with average trend increasing between all consecutive timepoints; other - miRNAs classified into other minor MCL expression clusters. Numbers in parentheses show the ranking of a miRNA among all profiled miRNAs, sorted by the maximal value of expression at any timepoint.

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Manakov et al. BMC Genomics 2009 10:419   doi:10.1186/1471-2164-10-419