Table 3 |
||||||
|
Comparison of methods |
||||||
|
Contigsa |
Singletons |
Mate Splits |
Contigs Splita |
Contigs Merged |
Timeb |
|
|
|
||||||
|
PAVE |
5601c |
0 |
0 |
186 |
0 |
3 h 25 m |
|
TGICL |
8888 |
71 |
16583 |
3401 |
12 |
25 m |
|
CAP3 |
8811 |
342 |
16621 |
3454 |
15 |
2 h 12 m |
|
|
||||||
|
a Does not include singletons. b PAVE and TGICL used 4 processors, whereas CAP3 is not parallelized so used one processor. c 3514 contigs are joined by n's where 53 of them are single-mate pair contigs. |
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|
Soderlund et al. BMC Genomics 2009 10:400 doi:10.1186/1471-2164-10-400 |
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