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Open Access Highly Accessed Research article

What can you do with 0.1× genome coverage? A case study based on a genome survey of the scuttle fly Megaselia scalaris (Phoridae)

David A Rasmussen and Mohamed AF Noor*

Author Affiliations

Department of Biology, Duke University, Durham, NC 27708 USA

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BMC Genomics 2009, 10:382  doi:10.1186/1471-2164-10-382

Published: 18 August 2009

Additional files

Additional file 1:

M. scalaris Repetitive Elements Identified Through Homology Searches. List of all repetitive elements identified through homology searches of the Anopheles and Drosophila RepBase libraries.

Format: XLS Size: 25KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional file 2:

M. scalaris Repetitive Elements Identified Computationally. Repetitive element motifs identified with REFinder.plx. The Seed ID is the GSS sequence trace around which the contig was built. The depth of coverage for was calculated as the average coverage over 40 bp windows.

Format: XLS Size: 137KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional file 3:

M. scalaris Mitochondrial Genome Consensus Sequence. FASTA file containing the consensus sequence for our alignment of the M. scalaris mitochondrial genome with genes noted as Microsoft Word comments.

Format: DOC Size: 40KB Download file

This file can be viewed with: Microsoft Word Viewer

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Additional file 4:

D. pseudoobscura bogotana Mitochondrial Genome Consensus Sequence. FASTA file containing the consensus sequence for our alignment of the D. pseudoobscura bogotana mitochondrial genome.

Format: ZIP Size: 5KB Download file

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Additional file 5:

Potential M. scalaris Homologs of Drosophila melanogaster Genes. List of all D. melanogaster genes that showed significant sequence similarity to at least one M. scalaris GSS sequence trace.

Format: XLS Size: 143KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional file 6:

Potential M. scalaris Homologs of Drosophila virilis Genes. List of all D. virilis genes that showed significant sequence similarity to at least one M. scalaris GSS sequence trace.

Format: XLS Size: 172KB Download file

This file can be viewed with: Microsoft Excel Viewer

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Additional file 7:

Potential M. scalaris Homologs of Anopheles gambiae Genes. List of all A. gambiae genes that showed significant sequence similarity to at least one M. scalaris GSS sequence trace.

Format: XLS Size: 27KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data