Table 2

Comparisons of the average tag count in 500 bp windows across the yeast genome among different samples

Experiment A

Experiment B

Experiment #

Experiment ID

Experiment #

Experiment ID

R2

p-value


10

Input_NB

14

Input_NB

0.9455

< 2.2e-16

14

Input_NB

15

Input_ACGT

0.9556

< 2.2e-16

14

Input_NB

16

Input_CATT

0.9473

< 2.2e-16

14

Input_NB

17

Input_GTAT

0.9685

< 2.2e-16

14

Input_NB

18

Input_TGCT

0.9325

< 2.2e-16

15

Input_ACGT

16

Input_CATT

0.9422

< 2.2e-16

17

Input_GTAT

18

Input_TGCT

0.9304

< 2.2e-16


1

PolII_Rep1_ACGT

8

PolII_Rep2_TGCT

0.8904

< 2.2e-16

1

PolII_Rep1_ACGT

9

PolII_Rep3_ACGT

0.9104

< 2.2e-16

1

PolII_Rep1_ACGT

13

PolII_Rep4_NB

0.9040

< 2.2e-16

8

PolII_Rep2_TGCT

9

PolII_Rep3_ACGT

0.9288

< 2.2e-16

8

PolII_Rep2_TGCT

13

PolII_Rep4_NB

0.9464

< 2.2e-16

9

PolII_Rep3_ACGT

13

PolII_Rep4_NB

0.9302

< 2.2e-16


4

Ste12_Rep1_TGCT

7

Ste12_Rep2_GTAT

0.9655

< 2.2e-16

4

Ste12_Rep1_TGCT

12

Ste12_Rep3_NB

0.9058

< 2.2e-16

7

Ste12_Rep2_GTAT

12

Ste12_Rep3_NB

0.8963

< 2.2e-16


Correlation coefficients on the average tag count in 500 bp bins between two experiments among barcoded and non-barcoded input DNA samples from the section "Similar barcode behavior with the same DNA sample" (Comparison 1–7), among barcoded and non-barcoded PolII replicates (Comparison 8–13) and among barcoded and non-barcoded Ste12 replicates (Comparison 14–16). p-values are inferior to 2.2e-16, the lowest p-value that R can calculate. See Methods for details of the analysis.

Lefrançois et al. BMC Genomics 2009 10:37   doi:10.1186/1471-2164-10-37

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