BMC Genomics

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Comparison of next generation sequencing technologies for transcriptome characterization

P Kerr Wall, Jim Leebens-Mack, André S Chanderbali, Abdelali Barakat, Erik Wolcott, Haiying Liang, Lena Landherr, Lynn P Tomsho, Yi Hu, John E Carlson, Hong Ma, Stephan C Schuster, Douglas E Soltis, Pamela S Soltis, Naomi Altman and Claude W dePamphilis*

BMC Genomics 2009, 10:347 doi:10.1186/1471-2164-10-347

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Research article   Open Access

Chestnut resistance to the blight disease: insights from transcriptome analysis

Abdelali Barakat, Meg Staton, Chun-Huai Cheng, Joseph Park, Norzawani Buang Mohammed Yassin, Stephen Ficklin, Chia-Chun Yeh, Fred Hebard, Kathleen Baier, William Powell, Stephan C Schuster, Nicholas Wheeler, Albert Abbott, John E Carlson, Ronald Sederoff BMC Plant Biology 2012, 12:38 (19 March 2012)

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SNP markers retrieval for a non-model species: a practical approach

Arwa Shahin, Thomas van Gurp, Sander A Peters, Richard GF Visser, Jaap M van Tuyl, Paul Arens BMC Research Notes 2012, 5:79 (29 January 2012)

Proceedings   Open Access

UASIS: Universal Automatic SNP Identification System

Danny C C Poo, Shaojiang Cai, James T L Mah BMC Genomics 2011, 12(Suppl 3):S9 (30 November 2011)

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RNA-Seq reveals genotype-specific molecular responses to water deficit in eucalyptus

Emilie Villar, Christophe Klopp, Céline Noirot, Evandro Novaes, Matias Kirst, Christophe Plomion, Jean-Marc Gion BMC Genomics 2011, 12:538 (2 November 2011)

Research article   Open Access

Identification, utilisation and mapping of novel transcriptome-based markers from blackcurrant (Ribes nigrum)

Joanne R Russell, Micha Bayer, Clare Booth, Linda Cardle, Christine A Hackett, Pete E Hedley, Linzi Jorgensen, Jenny A Morris, Rex M Brennan BMC Plant Biology 2011, 11:147 (28 October 2011)

Research article   Open Access

The transcriptome of the novel dinoflagellate Oxyrrhis marina (Alveolata: Dinophyceae): response to salinity examined by 454 sequencing

Chris D Lowe, Luciane V Mello, Najma Samatar, Laura E Martin, David JS Montagnes, Phillip C Watts BMC Genomics 2011, 12:519 (20 October 2011)

Research article   Open Access

Effect of the down-regulation of the high Grain Protein Content (GPC) genes on the wheat transcriptome during monocarpic senescence

Dario Cantu, Stephen P Pearce, Assaf Distelfeld, Michael W Christiansen, Cristobal Uauy, Eduard Akhunov, Tzion Fahima, Jorge Dubcovsky BMC Genomics 2011, 12:492 (7 October 2011)

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RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

Andrew J Severin, Jenna L Woody, Yung-Tsi Bolon, Bindu Joseph, Brian W Diers, Andrew D Farmer, Gary J Muehlbauer, Rex T Nelson, David Grant, James E Specht, Michelle A Graham, Steven B Cannon, Gregory D May, Carroll P Vance, Randy C Shoemaker BMC Plant Biology 2010, 10:160 (5 August 2010)

Research article   Open Access

Heart transcriptome of the bank vole (Myodes glareolus): towards understanding the evolutionary variation in metabolic rate

Wiesław Babik, Michał Stuglik, Weihong Qi, Marzanna Kuenzli, Katarzyna Kuduk, Paweł Koteja, Jacek Radwan BMC Genomics 2010, 11:390 (21 June 2010)