Table 2 |
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|
Tandem segmental duplications in C. elegans of size 1,000 or larger |
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|
Coordinates Dup1 |
Coordinates Dup2 |
Matches (bp) |
Orientation |
N Genes Dup1 |
N Genes Dup2 |
Associated Transposons |
|
|
||||||
|
V:2347883..2454596 |
V:2455844..2562875 |
106707 |
F |
26 |
26 |
Cemar1 |
|
V:8813143..8850811 |
V:8855237..8892906 |
37642 |
F |
11 |
13 |
TC5, Cer9 |
|
III:1251054..1258404 |
III:1259414..1266845 |
7339 |
F |
4 |
4 |
NO |
|
IV:12471444..12478970 |
IV:12478981..12486507 |
7527 |
F |
3 |
3 |
NO |
|
X:226651..231363 |
X:236067..240779 |
4713 |
F |
3 |
3 |
NDNAX1 |
|
IV:5241391..5244977 |
IV:5246223..5249809 |
3587 |
R |
3 |
3 |
NO |
|
I:12627236..12632544 |
I:12635161..12640469 |
5304 |
R |
2 |
2 |
NO |
|
X:1940626..1945025 |
X:1949155..1953554 |
4399 |
F |
2 |
2 |
NO |
|
V:9087269..9088593 |
V:9089256..9090580 |
1325 |
R |
2 |
2 |
NO |
|
X:3558880..3563952 |
X:3567445..3572527 |
4985 |
F |
1 |
1 |
NO |
|
IV:13129621..13133199 |
IV:13135213..13138791 |
3579 |
F |
1 |
1 |
NDNAX3 |
|
I:11616806..11620253 |
I:11623105..11626552 |
3448 |
R |
1 |
1 |
NO |
|
IV:4348439..4351841 |
IV:4352611..4356013 |
3403 |
R |
1 |
1 |
NO |
|
X:4333166..4336008 |
X:4339618..4342467 |
2823 |
R |
1 |
1 |
NO |
|
II:11757121..11759167 |
II:11759614..11761660 |
2047 |
R |
1 |
1 |
NO |
|
V:13967844..13969831 |
V:13974541..13976528 |
1988 |
R |
1 |
1 |
NO |
|
III:7171786..7173519 |
III:7174002..7175735 |
1734 |
R |
1 |
1 |
NO |
|
IV:16339625..16341334 |
IV:16342450..16344159 |
1710 |
R |
1 |
1 |
NO |
|
III:11787629..11789338 |
III:11790417..11792126 |
1709 |
R |
1 |
1 |
NO |
|
III:2433538..2435215 |
III:2436093..2437770 |
1678 |
R |
1 |
1 |
NO |
|
I:11303731..11305210 |
I:11308113..11309592 |
1480 |
R |
1 |
1 |
NO |
|
IV:1617460..1618943 |
IV:1622242..1623725 |
1481 |
R |
1 |
1 |
NO |
|
II:3588277..3589715 |
II:3592045..3593483 |
1439 |
R |
1 |
1 |
NO |
|
IV:9284870..9286382 |
IV:9292363..9293902 |
1466 |
F |
1 |
1 |
NO |
|
IV:2566235..2567558 |
IV:2569372..2570695 |
1324 |
R |
1 |
1 |
NO |
|
IV:16766557..16767821 |
IV:16768481..16769745 |
1265 |
R |
1 |
1 |
LINE2 |
|
X:8319606..8320838 |
X:8322049..8323281 |
1233 |
R |
1 |
1 |
NO |
|
I:11355228..11356362 |
I:11358159..11359293 |
1135 |
R |
1 |
1 |
NO |
|
I:13890329..13891445 |
I:13893120..13894236 |
1117 |
R |
1 |
1 |
NO |
|
II:13079317..13080572 |
II:13082405..13083577 |
1173 |
R |
1 |
1 |
NO |
|
IV:5232834..5233864 |
IV:5236511..5237541 |
1031 |
R |
1 |
1 |
NO |
|
|
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|
Vergara et al. BMC Genomics 2009 10:329 doi:10.1186/1471-2164-10-329 |
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