Alignment of the genomes of Pl TT01 and Pa ATCC43949 using the ARTEMIS comparison tool. Note the broad linear alignment of the two genomes with the presence of several large inversions. The breakpoints of these chromosomal rearrangements are flanked by numerous transposons and directly repeated sequences.
Wilkinson et al. BMC Genomics 2009 10:302 doi:10.1186/1471-2164-10-302