Table 1 |
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|
Basic sequence characteristics of the Anopheles gambiae genes isolated during this study and their orthologs from Aedes aegypti and Culex quinquefasciatus. |
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|
Species |
Length (nt) |
5'UTR (nt) |
Coding region (nt) |
3'UTR (nt) |
Protein length (aa) |
Identity//similarity1 (%) |
Gene status2 |
|
|
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|
AgRopn1l |
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|
An. gambiae |
2391–25063 |
29–1443 |
2040 |
319 |
679 |
unannotated |
|
|
Ae. aegypti |
2166 |
721 |
54.2/65.3 |
14993 |
|||
|
Cx. quinquefasciatus |
2091 |
696 |
74.7/83.8 |
07290 |
|||
|
AgDzip1l |
|||||||
|
An. gambiae |
2623–27073 |
76–1603 |
2547 |
48 |
848 |
01165 |
|
|
Ae. aegypti |
2502 |
833 |
46.5/58.1 |
unannotated |
|||
|
Cx. quinquefasciatus |
2328 |
775 |
63.5/74.2 |
11569 |
|||
|
Ams |
|||||||
|
An. gambiae |
1356 |
39 |
1227 |
90 |
408 |
unannotated |
|
|
Ae. aegypti |
nd4 |
nd |
13.8/30.85 |
unannotated |
|||
|
Cx. quinquefasciatus |
nd |
nd |
70.8/89.95 |
unannotated |
|||
|
mts |
|||||||
|
An. gambiae |
1122 |
108 |
897 |
117 |
295 |
unannotated |
|
|
Ae. aegypti |
1102 |
346 |
25.1/36.1 |
09638 |
|||
|
Cx. quinquefasciatus |
912 |
303 |
45.8/54.9 |
00571 |
|||
|
AAms |
|||||||
|
An. gambiae |
3724 |
87 |
3567 |
157 |
1188 |
unannotated |
|
|
Ae. aegypti |
4707 |
1568 |
22.6/38.5 |
unannotated |
|||
|
Cx. quinquefasciatus |
5022 |
1673 |
36.1/50.4 |
unannotated |
|||
|
|
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|
1 Protein sequence identity/similarity calculated after exclusion of gapped regions. Values for the An. gambiae/Ae. aegypti comparisons are given in the rows corresponding to Aedes aegypti; these values are also representative of the identity/similarity between An. gambiae and Cx. quinquefasciatus. The identity/similarity between Ae. aegypti and Cx. quinquefasciatus proteins is given in the Cx. quinquefasciatus rows. 2 The Ensembl gene ID (abridged by omitting the species codes AGAP0, AAEL0, and CPIJ0 for An. gambiae, Ae. aegypti, and Cx. quinquefasciatus; respectively) is given for genes with complete (bold) or partially (italic) predicted sequence in the recent VectorBase gene builds (An. gambiae: AgamP3.4; Ae. aegypti: AaegL1.1; Cx. quinquefasciatus: CpipJ1.0_5); genes that do not match any gene predictions are marked as unannotated. 3 Several alternative transcription start sites identified. 4 nd – not determined 5 Data based on a portion of a gene sequence; see text for details. |
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Krzywinska and Krzywinski BMC Genomics 2009 10:300 doi:10.1186/1471-2164-10-300 |
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