Table 5 |
||||
|
Repetitive sequence composition of Hessian fly BAC ends. |
||||
|
Repeat class |
Repeat type |
Total bp |
% BES |
% Total repetitive |
|
|
||||
|
Class I transposable elements |
62,774 |
0.47 |
2.64 |
|
|
LTRs |
36,337 |
1.52 |
||
|
Non-LTRs |
17,197 |
0.72 |
||
|
Unknown |
9,240 |
0.39 |
||
|
Class II transposable elements |
45,599 |
0.34 |
1.91 |
|
|
hAT |
67 |
0.00 |
||
|
Mos 1 |
39,806 |
1.66 |
||
|
mariner |
||||
|
Other |
3,664 |
0.15 |
||
|
mariner |
||||
|
Other |
2,062 |
0.08 |
||
|
Simple sequence repeats |
107,962 |
0.81 |
4.51 |
|
|
Low-complexity DNA |
239,182 |
1.79 |
10.00 |
|
|
Ribosomal |
rRNA |
17,249 |
0.13 |
0.72 |
|
tRNA |
536 |
0.00 |
0.02 |
|
|
protein |
3918 |
0.03 |
0.16 |
|
|
Helicases |
8,862 |
0.07 |
0.37 |
|
|
Gene families & unclassified TEs |
1,905,881 |
14.27 |
79.68 |
|
|
Total Repetitive |
2,391,963 |
17.91 |
||
|
Total BES |
13,351,753 |
|||
|
|
||||
|
Aggarwal et al. BMC Genomics 2009 10:293 doi:10.1186/1471-2164-10-293 |
||||
