Open Access Software

BioQuali Cytoscape plugin: analysing the global consistency of regulatory networks

Carito Guziolowski1*, Annabel Bourdé2*, Francois Moreews1,3 and Anne Siegel1,4

1 INRIA, Centre Rennes – Bretagne Atlantique, Symbiose, Campus de Beaulieu, 35042 Rennes, France

2 INRIA, Centre Rennes – Bretagne Atlantique, GenOuest, Campus de Beaulieu, 35042 Rennes, France

3 INRA SIGENAE, Campus de Beaulieu, 35042 Rennes, France

4 CNRS, Université de Rennes 1, IRISA-UMR 6074, Campus de Beaulieu, 35042 Rennes, France

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BMC Genomics 2009, 10:244 doi:10.1186/1471-2164-10-244

Published: 26 May 2009

Additional files

Additional file 1:

Complete view of Inconsistencies Detection. Screenshot of the BioQuali plugin results when an inconsistency is detected. The Results Panel to the right lists the inconsistent edges detected.

Format: JPEG Size: 1.7MB Download file

Open Data

Additional file 2:

Comparing BioQuali with COMA plugin. Analysis of the Corynebacterium regulatory network using both Cytoscape plugins.

Format: PDF Size: 462KB Download file

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Open Data

Additional file 3:

Sign operators. Overview of the four operators used in solving the consistency of a qualitative system.

Format: PDF Size: 27KB Download file

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Open Data