Table 2 |
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|
The overlap between KEGG pathway genes and hits/nonhits in the corresponding RNAi screen. |
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|
KEGG pathway (#genes) |
All hits |
Experimentally validated hits |
Top-ranked hits |
All nonhits |
Top-ranked nonhits (RR > 0.9) |
Top-ranked nonhits (RR > 0.8) |
|
|
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|
Hh signaling pathway (23) |
9 |
6 |
9 |
14 |
7 |
10 |
|
|
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|
Wnt signaling pathway (65) |
9 |
8 |
9 |
56 |
32 |
48 |
|
|
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|
Each cell represents the overlap between KEGG pathway genes (rows) and all, or subsets of, hits/nonhits in the corresponding RNAi screen (columns). The hits/nonhits were ranked by NePhe score. The top-ranked hits (column 3) are of the same size as the experimentally validated hits (column 2). |
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|
Wang et al. BMC Genomics 2009 10:220 doi:10.1186/1471-2164-10-220 |
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