BioMart – biological queries made easy
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* Corresponding author: Arek Kasprzyk Arek.Kasprzyk@oicr.on.ca
BMC Genomics 2009, 10:22 doi:10.1186/1471-2164-10-22
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Rizwan Masud, Khader Shameer, Aparna Dhar, Keyue Ding, Ifitkhar J Kullo Journal of Clinical Bioinformatics 2012, 2:6 (12 March 2012) This article is part of a collection on Biomarkers in human... |
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ABrowse - a customizable next-generation genome browser framework Lei Kong, Jun Wang, Shuqi Zhao, Xiaocheng Gu, Jingchu Luo, Ge Gao BMC Bioinformatics 2012, 13:2 (5 January 2012) |
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New concepts for building vocabulary for cell image ontologies Anne L Plant, John T Elliott, Talapady N Bhat BMC Bioinformatics 2011, 12:487 (21 December 2011) |
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Proceedings
Constructing a gene semantic similarity network for the inference of disease genes Rui Jiang, Mingxin Gan, Peng He BMC Systems Biology 2011, 5(Suppl 2):S2 (14 December 2011) |
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Functional characterization of protein domains common to animal viruses and mouse Akira R Kinjo, Yutaro Kumagai, Huy Dinh, Osamu Takeuchi, Daron M Standley BMC Genomics 2011, 12(Suppl 3):S21 (30 November 2011) |
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Meeting abstract
Comparative studies of high-throughput biological graphs Jonathan Reyles, Charles Phillips BMC Bioinformatics 2011, 12(Suppl 7):A12 (5 August 2011) |
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Measuring and analyzing tissue specificity of human genes and protein complexes Dorothea Emig, Tim Kacprowski, Mario Albrecht EURASIP Journal on Bioinformatics and Systems Biology 2011, 2011:5 (4 August 2011) This article is part of a collection on Computational Systems... |
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Review
The 2nd DBCLS BioHackathon: interoperable bioinformatics Web services for integrated applications Toshiaki Katayama, Mark D Wilkinson, Rutger Vos, Takeshi Kawashima, Shuichi Kawashima, Mitsuteru Nakao, Yasunori Yamamoto, Hong-Woo Chun, Atsuko Yamaguchi, Shin Kawano, Jan Aerts, Kiyoko F Aoki-Kinoshita, Kazuharu Arakawa, Bruno Aranda, Raoul JP Bonnal, José M Fernández, Takatomo Fujisawa, Paul MK Gordon, Naohisa Goto, Syed Haider, Todd Harris, Takashi Hatakeyama, Isaac Ho, Masumi Itoh, Arek Kasprzyk, Nobuhiro Kido, Young-Joo Kim, Akira R Kinjo, Fumikazu Konishi, Yulia Kovarskaya et al. Journal of Biomedical Semantics 2011, 2:4 (2 August 2011) The challenges discussed during the second DBCLS BioHackathon, from data providers, middleware providers, interface designers and end-users perspective.
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Methodology article
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Software
A database and API for variation, dense genotyping and resequencing data Daniel Rios, William M McLaren, Yuan Chen, Ewan Birney, Arne Stabenau, Paul Flicek, Fiona Cunningham BMC Bioinformatics 2010, 11:238 (11 May 2010) This article is part of a collection on Ensembl update 2010 |
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Correspondence
Touring Ensembl: A practical guide to genome browsing Giulietta M Spudich, Xosé M Fernández-Suárez BMC Genomics 2010, 11:295 (11 May 2010) This article is part of a collection on Ensembl update 2010 |
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Yuan Chen, Fiona Cunningham, Daniel Rios, William M McLaren, James Smith, Bethan Pritchard, Giulietta M Spudich, Simon Brent, Eugene Kulesha, Pablo Marin-Garcia, Damian Smedley, Ewan Birney, Paul Flicek BMC Genomics 2010, 11:293 (11 May 2010) This article is part of a collection on Ensembl update 2010 The Ensembl project collates variation in genome sequences across a large number of chordate species and the recent update describes the comprehensive web-based functions available for tabulating and visualizing genome variants.
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Software
Morris A Swertz, K Joeri Velde, Bruno M Tesson, Richard A Scheltema, Danny Arends, Gonzalo Vera, Rudi Alberts, Martijn Dijkstra, Paul Schofield, Klaus Schughart, John M Hancock, Damian Smedley, Katy Wolstencroft, Carole Goble, Engbert O de Brock, Andrew R Jones, Helen E Parkinson, Ritsert C Jansen Genome Biology 2010, 11:R27 (9 March 2010) XGAP, a software platform for the integration and analysis of genotype and phenotype data. |
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Tracking chromosomal positions of oligomers - a case study with Illumina's BovineSNP50 beadchip Armin O Schmitt, Ralf H Bortfeldt, Gudrun A Brockmann BMC Genomics 2010, 11:80 (1 February 2010) |
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Research article
Systematic identification and evolutionary features of rhesus monkey small nucleolar RNAs Yong Zhang, Jun Liu, Chunshi Jia, Tingting Li, Rimao Wu, Jie Wang, Ying Chen, Xiaoting Zou, Runsheng Chen, Xiu-Jie Wang, Dahai Zhu BMC Genomics 2010, 11:61 (25 January 2010) |
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Research article
Michael Gruenberger, Rudi Alberts, Damian Smedley, Morris Swertz, Paul Schofield, Klaus Schughart BMC Research Notes 2010, 3:16 (22 January 2010) This article is part of a collection on Databases |
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Johannes Wagener, Ola Spjuth, Egon L Willighagen, Jarl ES Wikberg BMC Bioinformatics 2009, 10:279 (4 September 2009) This article is part of a collection on Cloud computing tools and... |
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