Table 7

Major transcription factor families identified by conserved domain annotation of larval transcriptome

Sequences (n)

Domain ID

Conserved domain description


1

pfam01722

BolA-like protein

0

pfam00313

Cold-shock DNA-binding domain

1

pfam01381

Helix-turn-helix

2

pfam02229

Transcriptional Coactivator p15

0

pfam02671

Paired amphipathic helix repeat

1

pfam02864

Signal transducer and activator of transcription

1

pfam01167

Tub family

4

pfam00046

Homeobox domain

1

pfam00447

HSF-type DNA-binding

2

pfam00870

P53 DNA-binding domain

6

pfam02257

RFX DNA-binding domain

2

pfam01422

NF-X1-type zinc finger protein

3

pfam02319

E2F/DP winged-helix DNA-binding domain

1

pfam00319

SRF-type transcription factor

1

pfam00250

Fork head

12

pfam07716, pfam00170

Basic region leucine zipper & bZIP

9

pfam00010

Helix-loop-helix DNA-binding domain

3

pfam00249

Myb-like DNA-binding domain

12

pfam00642

Zinc finger, CCCH type

5

pfam00096

Zinc finger, C2H2 type


Meyer et al. BMC Genomics 2009 10:219   doi:10.1186/1471-2164-10-219

Open Data