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Open Access Highly Accessed Research article

An examination of positive selection and changing effective population size in Angus and Holstein cattle populations (Bos taurus) using a high density SNP genotyping platform and the contribution of ancient polymorphism to genomic diversity in Domestic cattle

Sean MacEachern125*, Ben Hayes1, John McEwan3 and Mike Goddard14

Author Affiliations

1 Primary Industries Research Victoria, Animal Genetics and Genomics, Attwood VIC 3049, Australia

2 Latrobe University, Department of Genetics, Bundoora VIC 3086, Australia

3 Animal Genomics, AgResearch, Invermay, Private Bag 50034, Mosgiel, New Zealand

4 Melbourne University, School of Agriculture and Food Systems, Melbourne, VIC 3000, Australia

5 Avian Disease and Oncology Laboratory 3606 E Mt. Hope Rd, East Lansing, MI 48823, USA

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BMC Genomics 2009, 10:181  doi:10.1186/1471-2164-10-181

Published: 24 April 2009

Additional files

Additional file 1:

Plots for Angus and Holstein examining the frequency of the derived allele and Fst in relation to genomic position for chromosome 1.

Format: JPEG Size: 147KB Download file

Open Data

Additional file 2:

Plots for Angus and Holstein examining the frequency of the derived allele and Fst in relation to genomic position for chromosome 2.

Format: JPEG Size: 140KB Download file

Open Data

Additional file 3:

Plots for Angus and Holstein examining the frequency of the derived allele and Fst in relation to genomic position for chromosome 3.

Format: JPEG Size: 141KB Download file

Open Data

Additional file 4:

Plots for Angus and Holstein examining the frequency of the derived allele and Fst in relation to genomic position for chromosome 4.

Format: JPEG Size: 131KB Download file

Open Data

Additional file 5:

Plots for Angus and Holstein examining the frequency of the derived allele and Fst in relation to genomic position for chromosome 5.

Format: JPEG Size: 130KB Download file

Open Data

Additional file 6:

Plots for Angus and Holstein examining the frequency of the derived allele and Fst in relation to genomic position for chromosome 6.

Format: JPEG Size: 144KB Download file

Open Data

Additional file 7:

Plots for Angus and Holstein examining the frequency of the derived allele and Fst in relation to genomic position for chromosome 7.

Format: JPEG Size: 131KB Download file

Open Data

Additional file 8:

Plots for Angus and Holstein examining the frequency of the derived allele and Fst in relation to genomic position for chromosome 8.

Format: JPEG Size: 138KB Download file

Open Data

Additional file 9:

Plots for Angus and Holstein examining the frequency of the derived allele and Fst in relation to genomic position for chromosome 9.

Format: JPEG Size: 122KB Download file

Open Data

Additional file 10:

Plots for Angus and Holstein examining the frequency of the derived allele and Fst in relation to genomic position for chromosome 10.

Format: JPEG Size: 137KB Download file

Open Data

Additional file 11:

Plots for Angus and Holstein examining the frequency of the derived allele and Fst in relation to genomic position for chromosome 11.

Format: JPEG Size: 138KB Download file

Open Data

Additional file 12:

Plots for Angus and Holstein examining the frequency of the derived allele and Fst in relation to genomic position for chromosome 12.

Format: JPEG Size: 119KB Download file

Open Data

Additional file 13:

Plots for Angus and Holstein examining the frequency of the derived allele and Fst in relation to genomic position for chromosome 13.

Format: JPEG Size: 129KB Download file

Open Data

Additional file 14:

Plots for Angus and Holstein examining the frequency of the derived allele and Fst in relation to genomic position for chromosome 14.

Format: JPEG Size: 123KB Download file

Open Data

Additional file 15:

Plots for Angus and Holstein examining the frequency of the derived allele and Fst in relation to genomic position for chromosome 15.

Format: JPEG Size: 119KB Download file

Open Data

Additional file 16:

Plots for Angus and Holstein examining the frequency of the derived allele and Fst in relation to genomic position for chromosome 16.

Format: JPEG Size: 127KB Download file

Open Data

Additional file 17:

Plots for Angus and Holstein examining the frequency of the derived allele and Fst in relation to genomic position for chromosome 17.

Format: JPEG Size: 122KB Download file

Open Data

Additional file 18:

Plots for Angus and Holstein examining the frequency of the derived allele and Fst in relation to genomic position for chromosome 18.

Format: JPEG Size: 111KB Download file

Open Data

Additional file 19:

Plots for Angus and Holstein examining the frequency of the derived allele and Fst in relation to genomic position for chromosome 19.

Format: JPEG Size: 112KB Download file

Open Data

Additional file 20:

Plots for Angus and Holstein examining the frequency of the derived allele and Fst in relation to genomic position for chromosome 20.

Format: JPEG Size: 121KB Download file

Open Data

Additional file 21:

Plots for Angus and Holstein examining the frequency of the derived allele and Fst in relation to genomic position for chromosome 21.

Format: JPEG Size: 104KB Download file

Open Data

Additional file 22:

Plots for Angus and Holstein examining the frequency of the derived allele and Fst in relation to genomic position for chromosome 22.

Format: JPEG Size: 116KB Download file

Open Data

Additional file 23:

Plots for Angus and Holstein examining the frequency of the derived allele and Fst in relation to genomic position for chromosome 23.

Format: JPEG Size: 104KB Download file

Open Data

Additional file 24:

Plots for Angus and Holstein examining the frequency of the derived allele and Fst in relation to genomic position for chromosome 24.

Format: JPEG Size: 113KB Download file

Open Data

Additional file 25:

Plots for Angus and Holstein examining the frequency of the derived allele and Fst in relation to genomic position for chromosome 25.

Format: JPEG Size: 98KB Download file

Open Data

Additional file 26:

Plots for Angus and Holstein examining the frequency of the derived allele and Fst in relation to genomic position for chromosome 26.

Format: JPEG Size: 106KB Download file

Open Data

Additional file 27:

Plots for Angus and Holstein examining the frequency of the derived allele and Fst in relation to genomic position for chromosome 27.

Format: JPEG Size: 100KB Download file

Open Data

Additional file 28:

Plots for Angus and Holstein examining the frequency of the derived allele and Fst in relation to genomic position for chromosome 28.

Format: JPEG Size: 101KB Download file

Open Data

Additional file 29:

Plots for Angus and Holstein examining the frequency of the derived allele and Fst in relation to genomic position for chromosome 29.

Format: JPEG Size: 99KB Download file

Open Data

Additional file 30:

Plots for Angus and Holstein examining the frequency of the derived allele and Fst in relation to genomic position for chromosome X.

Format: JPEG Size: 109KB Download file

Open Data