Table 6

Assembly contig and scaffold statistics

Btau 1.0

Btau 2.0

Btau 3.1

Btau 4.0


Contigs

Number

795,212

321,107

131,620

131,620

N50(kb)

4.20

18.90

48.70

48.70

Bases+Gaps(Gb)

2.26

2.62

2.73

2.73

Bases(Gb)

2.26

2.62

2.73

2.73

Percentage

85

95.1

95

Anchored and Oriented Scaffolds

Number

0

2215

2,055

2,194

N50(kb)

712

1,393

2,187

Bases+Gaps(Gb)

1.07

2.08

2.54

Bases(Gb)

0.89

1.99

2.43

Percentage

0

34.5

72.7

89

Anchored and Unoriented Scaffolds

Number

0

2194

998

137

N50(kb)

535

547

500

Bases+Gaps(Gb)

0.63

0.32

0.04

Bases(Gb)

0.51

0.3

0.04

Percentage

0

20.3

11

1

Unanchored Scaffolds

Number

449,727

98,058

13,045

11,830

N50(kb)

13.5

189

166

94

Bases+Gaps(Gb)

2.34

1.4

0.47

0.28

Bases(Gb)

2.26

1.2

0.44

0.26

Percentage

100

45.2

16.3

10

Total Scaffolds

Number

449,727

102,467

16,098

14,161

N50(kb)

13.5

434

997

1,922

Bases+Gaps(Gb)

2.34

3.1

2.87

2.87

Bases(Gb)

2.26

2.62

2.73

2.73

Percentage

100

100

100

100


Liu et al. BMC Genomics 2009 10:180   doi:10.1186/1471-2164-10-180

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