Table 1

Oligonucleotide probe sequences for single-nucleotide polymorphism (SNP) markers

NCBI SNP ID

Locus

Primers and detection probes

Rs29016875

C/T

Forward primer: 5'-GTCTGGTATTCCCATCTCTTTCAGA-3'

Reverse primer: 5'-TTACTGATTGAAGGGCAACTGTGT-3'

Probe 1: 5'-6FAM-TTTTCCACAGTTTATTGTG-3'

Probe 2: 5'-VIC-TTTTCCACAGCTTATTG-3'

Rs29015574

C/T

Forward primer: 5'-ACTCTGTCTCTGAGATTCGATTCAGT-3'

Reverse primer: 5'-CTGAAATCTTTCATTCCCTAGCTGATG-3'

Probe 1: 5'-6FAM-CTGAAAACTCTATCTCTG-3'

Probe 2: 5'-VIC-CTGAAAACTCTGTCTCTG-3'

Rs29024867

G/C

Forward primer: 5'-TGGAGGAGTTCTTTAATGCTTATAAATG-3'

Reverse primer: 5'-GGAGGCACAAAATAGTTAACAGACATC-3'

Probe 1: 5'-6FAM-CTAAACCGATTTGTAATC-3'

Probe 2: 5'-VIC-CTAAACGGATTTGTAATC-3'

Rs41257187

C/T

Forward primer: 5'-CGAAATGGCTTCAAACCCTCTGTA-3'

Reverse primer: 5'-TGTTGAAGGTGAAATCCACAGTGT-3'

Probe 1: 5'-6FAM-CAGAAAGCCTATCTCC-3'

Probe 2: 5'-VIC-AGAAAGCCCATCTCC-3'

Feugang et al. BMC Genomics 2009 10:176   doi:10.1186/1471-2164-10-176