Table 1

Oligonucleotide probe sequences for single-nucleotide polymorphism (SNP) markers

NCBI SNP ID

Locus

Primers and detection probes


Rs29016875

C/T

Forward primer: 5'-GTCTGGTATTCCCATCTCTTTCAGA-3'

Reverse primer: 5'-TTACTGATTGAAGGGCAACTGTGT-3'

Probe 1: 5'-6FAM-TTTTCCACAG

    T
TTATTGTG-3'

Probe 2: 5'-VIC-TTTTCCACAG

    C
TTATTG-3'

Rs29015574

C/T

Forward primer: 5'-ACTCTGTCTCTGAGATTCGATTCAGT-3'

Reverse primer: 5'-CTGAAATCTTTCATTCCCTAGCTGATG-3'

Probe 1: 5'-6FAM-CTGAAAACTCT

    A
TCTCTG-3'

Probe 2: 5'-VIC-CTGAAAACTCT

    G
TCTCTG-3'

Rs29024867

G/C

Forward primer: 5'-TGGAGGAGTTCTTTAATGCTTATAAATG-3'

Reverse primer: 5'-GGAGGCACAAAATAGTTAACAGACATC-3'

Probe 1: 5'-6FAM-CTAAAC

    C
GATTTGTAATC-3'

Probe 2: 5'-VIC-CTAAAC

    G
GATTTGTAATC-3'

Rs41257187

C/T

Forward primer: 5'-CGAAATGGCTTCAAACCCTCTGTA-3'

Reverse primer: 5'-TGTTGAAGGTGAAATCCACAGTGT-3'

Probe 1: 5'-6FAM-CAGAAAGCC

    T
ATCTCC-3'

Probe 2: 5'-VIC-AGAAAGCC

    C
ATCTCC-3'


Feugang et al. BMC Genomics 2009 10:176   doi:10.1186/1471-2164-10-176

Open Data