Table 1

Comparison of the available features of ESTPiper with other web-based EST analysis tools.

Web-based EST analysis pipeline

preAssemble

EGassembler

ESTExplorer

ESTpass

WebTraceMiner

ESTPiper


Base calling

Yes

No

No

No

Yes

Yes

Data cleaning

Yes

Yes

Yes

Yes

Yes

Yes

De novo assembly

No

Yes

Yes

Yes

No

Yes

Genome alignment

No

No

No

No

No

Yes

Annotation

No

No

Yes

Yes

No

Yes

GO analysis

No

No

Yes

Yes

No

Yes

Probe design

No

No

No

No

No

Yes


Tang et al. BMC Genomics 2009 10:174   doi:10.1186/1471-2164-10-174

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