Table 1 |
||||||
|
Comparison of the available features of ESTPiper with other web-based EST analysis tools. |
||||||
|
Web-based EST analysis pipeline |
preAssemble |
EGassembler |
ESTExplorer |
ESTpass |
WebTraceMiner |
ESTPiper |
|
|
||||||
|
Base calling |
Yes |
No |
No |
No |
Yes |
Yes |
|
Data cleaning |
Yes |
Yes |
Yes |
Yes |
Yes |
Yes |
|
De novo assembly |
No |
Yes |
Yes |
Yes |
No |
Yes |
|
Genome alignment |
No |
No |
No |
No |
No |
Yes |
|
Annotation |
No |
No |
Yes |
Yes |
No |
Yes |
|
GO analysis |
No |
No |
Yes |
Yes |
No |
Yes |
|
Probe design |
No |
No |
No |
No |
No |
Yes |
|
|
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|
Tang et al. BMC Genomics 2009 10:174 doi:10.1186/1471-2164-10-174 |
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