Table 3

454 FLX trace library sequence results

Sample ID

Organism

Library Type

input (ng)

Proportion of library sequenced

Raw bases (Mbp)

Number of reads

Average read length (bp)

% mapping to template/assembling*


TS-5

E. coli

Shotgun

1.0 ng

1.0

6.0

28730

210.5

69.9%

TS-6

E. coli

Shotgun

0.5 ng

1.0

5.7

26812

212.5

69.9%

TS-11

E. coli

Amplicon

1.0 ng

0.5

10.9

43217

252.5

99.2%

TS-12

E. coli

Amplicon

0.5 ng

0.5

14.0

55206

253.6

99.0%

IgG

M. Musclus

Shotgun

~1.2 ng

1.0

3.8

27712

139.8

10.1%

K27-1

M. Musclus

Shotgun

~1.2 ng

1.0

4.1

27701

147.7

35.3%

K27-2

M. Musclus

Shotgun

~1.2 ng

1.0

7.1

42829

166.0

21.0%

pX

H. Sapien

Shotgun

4.9 ng

0.21

42

244010

172.6

64.6%

Ace

A. longum

Shotgun

723 ng

0.005

67

278181

240.9

98.8%*


White et al. BMC Genomics 2009 10:116   doi:10.1186/1471-2164-10-116

Open Data