Table 3

The homologous loci of microsatellites mapped in Siberian jay on the chicken and zebra finch genome assigned using BLAST analyses of the clone sequences of the microsatellites and the homologous zebra finch WGS sequences.

Locus

Linkage group

Zebra finch Ensemble ID

Chicken Ensemble ID

Gga ^a

Chicken genome start position (bp)

SJ010

LG1

gb|AC188472.1

NW_001471554.1 Gga1_WGA51_2^b

1

9,129,918

SJ016

LG1

-

NW_001471545.1 Gga1_WGA43_2^b

1

9,256,107

SJ022

LG1

-

NW_001471526.1 Gga1_WGA26_2^b

1

2,462,620

SJ025

LG1

gb|AC188472.1

NW_001471534.1 Gga1_WGA33_2^b

1

20,407,077

SJ057

LG1

-

NW_001471554.1 Gga1_WGA51_2^b

1

7,801,901

SJ094

LG1

-

NW_001471554.1 Gga1_WGA51_2^b

1

22,042,793

SJ113

LG1

-

NW_001471545.1 Gga1_WGA43_2^b

1

8,757,200

SJ020

unlinked

-

NW_001471529.1 Gga1_WGA29_2^b

1

1,098,266

SJ005

unlinked

gb|AC188184.3

NW_001471513.1 Gga1_WGA14_2^c

1

2,080,202

SJ036

LG2

-

NW_001471639.1 Gga2_WGA66_2^b

2

20,469,429

SJ072

LG2

-

NW_001471633.1 Gga2_WGA60_2^b

2

32,273,874

CK.1B5D

LG2

gb|AC225878.2

NW_001471639.1 Gga2_WGA66_2^b

2

23,539,833

SJ026

LG2

gb|AC206427.2

NW_001471639.1 Gga2_WGA66_2^c

2

21,465,630

SJ054

LG2

gb|AC188186.2

NW_001471633.1 Gga2_WGA60_2^c

2

6,229,425

SJ116

LG2

gb|AC148379.2

NW_001471633.1 Gga2_WGA60_2^c

2

22,279,892

SJ034

unlinked

-

NW_001471654.1 Gga2_WGA81_2^b

2

2,075,856

SJ015

LG3

gb|AC188188.2

NW_001471673.1 Gga3_WGA106_2^c

3

3,458,567

SJ032

LG7

-

NW_001471681.1 Gga4_WGA107_2^b

4

8,679,773

SJ087

LG7

gb|AC155211.2

NW_001471681.1 Gga4_WGA107_2^c

4

4,015,500

SJ117

LG7

-

NW_001471681.1 Gga4_WGA107_2^b

4

8,679,607

SJ049

LG4

-

NW_001471710.1 Gga5_WGA136_2^b

5

9,314,084

SJ009

LGZ

-

NW_001488876.1 GgaZ_WGA457_2^b

Z

1,412,682

SJ101

LG2

gb|AC213969.2

NW_001488849.1 GgaZ_WGA430_2^b

Z

1,097,987

SJ039

LG1

gb|AC231254.2

NW_001488882.1 GgaZ_WGA463_2^c

Z

1,315,022

SJ076

LG3

gb|AC188376.1

NW_001488862.1 GgaZ_WGA443_2^c

Z

825,441

SJ050

LG1

gb|AC189030.1

-

-

-

SJ051

LG1

gb|AC189030.1

-

-

-

SJ055

LG1

gb|AC189030.1

-

-

-

SJ064

LG1

gb|AC206426.2

-

-

-

SJ112

LG1

gb|AC192320.2

-

-

-

CK.2A5A

LG1

gb|AC188469.1

-

-

-

SJ029

LG4

gb|AC188184.3

-

-

-

SJ033

LG4

gb|AC188469.1

-

-

-

SJ106

LG4

gb|AC188184.3

-

-

-

SJ017

LG5

gb|AC192320.2

-

-

-

SJ041

LG9

gb|AC210531.1

-

-

-

SJ069

LGZ

gb|AC188466.2

-

-

-

SJ083

LGZ

gb|AC229626.2

-

-

-

^a Chicken chromosome number; ^b Via the clone sequences of the Siberian jay microsatellites; ^c Via the homologous zebra finch WGS sequences

Jaari et al. BMC Genomics 2009 10:1   doi:10.1186/1471-2164-10-1