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Open Access Research article

Comparison of nonsense-mediated mRNA decay efficiency in various murine tissues

Almoutassem B Zetoune1, Sandra Fontanière1, Delphine Magnin2, Olga Anczuków1, Monique Buisson1, Chang X Zhang1 and Sylvie Mazoyer1*

Author Affiliations

1 Laboratoire de Génétique Moléculaire, Signalisation et Cancer UMR5201 CNRS, «Equipe Labellisée par la Ligue Nationale contre le Cancer», Université Lyon 1, Université de Lyon, Faculté de Médecine, 8 avenue Rockefeller, 69373 Lyon cedex 08, France

2 Unité de Prévention et d'Epidémiologie Génétique UMR5558 CNRS, Université Lyon 1, Université de Lyon, Centre Léon Bérard, 28 rue Laënnec, 69378 Lyon cedex 08, France

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BMC Genetics 2008, 9:83  doi:10.1186/1471-2156-9-83

Published: 5 December 2008

Abstract

Background

The Nonsense-Mediated mRNA Decay (NMD) pathway detects and degrades mRNAs containing premature termination codons, thereby preventing the accumulation of potentially detrimental truncated proteins. Intertissue variation in the efficiency of this mechanism has been suggested, which could have important implications for the understanding of genotype-phenotype correlations in various genetic disorders. However, compelling evidence in favour of this hypothesis is lacking. Here, we have explored this question by measuring the ratio of mutant versus wild-type Men1 transcripts in thirteen tissues from mice carrying a heterozygous truncating mutation in the ubiquitously expressed Men1 gene.

Results

Significant differences were found between two groups of tissues. The first group, which includes testis, ovary, brain and heart, displays a strong decrease of the nonsense transcript (average ratio of 18% of mutant versus wild-type Men1 transcripts, identical to the value measured in murine embryonic fibroblasts). The second group, comprising lung, intestine and thymus, shows much less pronounced NMD (average ratio of 35%). Importantly, the extent of degradation by NMD does not correlate with the expression level of eleven genes encoding proteins involved in NMD or with the expression level of the Men1 gene.

Conclusion

Mouse models are an attractive option to evaluate the efficiency of NMD in multiple mammalian tissues and organs, given that it is much easier to obtain these from a mouse than from a single individual carrying a germline truncating mutation. In this study, we have uncovered in the thirteen different murine tissues that we examined up to a two-fold difference in NMD efficiency.