Identification and characterisation of novel SNP markers in Atlantic cod: Evidence for directional selection

Thomas Moen¹^,2 , Ben Hayes¹^,2 , Frank Nilsen³^,4 , Madjid Delghandi⁵ , Kjersti T Fjalestad⁵ , Svein-Erik Fevolden⁶ , Paul R Berg²^,7 and Sigbjørn Lien²^,7

¹AKVAFORSK – Institute of Aquaculture Research, Ås, Norway

²CIGENE – Centre of Integrative Genetics, Ås, Norway

³Institute of Marine Research, Bergen, Norway

⁴Department of Biology, University of Bergen, Bergen, Norway

⁵Norwegian Institute of Fisheries and Aquaculture Research, Tromsø, Norway

⁶Norwegian College of Fishery Science, University of Tromsø, Tromsø, Norway

⁷Norwegian University of Life Science, Ås, Norway

author email corresponding author email

BMC Genetics 2008, 9:18doi:10.1186/1471-2156-9-18


Published:	26 February 2008

Additional files

Additional file 1:

SNP details. Properties of all 318 SNPs that were polymorphic, segregating, and could be reliably scored (SNP name, contig name, multiplex, contig sequence, SNP sequence, primer sequences, BLASTX and BLASTN results, synonymous/non-synonymous SNP, genotype counts, allele- and genotype frequencies, heterozygosities, F_ST-values, tests for HWE)

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Additional file 2:

Population parameters of outlier SNPs. Properties of high-F_SToutlier SNPs (F_ST-value, BLASTX hit, biological function, synonymous/non-synonymous SNP, allele frequencies, tests for HWE)

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