Table 1

Theoretical genotype description of the KIT locus by the splice mutation and copy number variation.

Genotypea

Spliced copy to Total copy

Ratio of b spliced (%)

Ratio of c duplicated (%)

Seed No.d


i/i(IBe)

0:2

0

0

1

IP/i(IBe)

0:3

0

33.3

2

IP/IP

0:4

0

50

3

I2/IP

1:5

20

60

4

I1/IP

1:4

25

50

5

I2/i(IBe)

1:4

25

50

5

I1/i(IBe)

1:3

33.3

33.3

6

I2/I2

2:6

33.3

66.7

7

I1/I2

2:5

40

60

8

I3/IP

2:5

40

60

8

I1/I1

2:4

50

50

9

I3/i(IBe)

2:4

50

50

9

I2/I3

3:6

50

66.7

10

I1/I3

3:5

60

60

11

I3/I3

4:6

66.7

66.7

12


a, IL allele is not included because it is a very rare allele that has been reported once in a synthetic line by crossing Large White and Meishan breeds [4].

b, This is the reference ratio for Pyro_Splice.

c, This is the reference ratio for qOLA_CNV and Pyro_CNV.

Duplicated copy number = Total copy number – 2.

d, These are numbers of class centroids used for nearest centroid sorting.

Seo et al. BMC Genetics 2007 8:81   doi:10.1186/1471-2156-8-81

Open Data