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Theoretical genotype description of the KIT locus by the splice mutation and copy number variation. |
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| Genotypea |
Spliced copy to Total copy |
Ratio of b spliced (%) |
Ratio of c duplicated (%) |
Seed No.d |
|
|
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| i/i(IBe) |
0:2 |
0 |
0 |
1 |
| IP/i(IBe) |
0:3 |
0 |
33.3 |
2 |
| IP/IP |
0:4 |
0 |
50 |
3 |
| I2/IP |
1:5 |
20 |
60 |
4 |
| I1/IP |
1:4 |
25 |
50 |
5 |
| I2/i(IBe) |
1:4 |
25 |
50 |
5 |
| I1/i(IBe) |
1:3 |
33.3 |
33.3 |
6 |
| I2/I2 |
2:6 |
33.3 |
66.7 |
7 |
| I1/I2 |
2:5 |
40 |
60 |
8 |
| I3/IP |
2:5 |
40 |
60 |
8 |
| I1/I1 |
2:4 |
50 |
50 |
9 |
| I3/i(IBe) |
2:4 |
50 |
50 |
9 |
| I2/I3 |
3:6 |
50 |
66.7 |
10 |
| I1/I3 |
3:5 |
60 |
60 |
11 |
| I3/I3 |
4:6 |
66.7 |
66.7 |
12 |
|
a, IL allele is not included because it is a very rare allele that has been reported once in a synthetic line by crossing Large White and Meishan breeds [4]. b, This is the reference ratio for Pyro_Splice. c, This is the reference ratio for qOLA_CNV and Pyro_CNV. Duplicated copy number = Total copy number – 2. d, These are numbers of class centroids used for nearest centroid sorting. | ||||
Seo et al. BMC Genetics 2007 8:81 doi:10.1186/1471-2156-8-81 |
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