SERpredict: Detection of tissue- or tumor-specific isoforms generated through exonization of transposable elements

Britta Mersch¹ , Noa Sela² , Gil Ast² , Sándor Suhai¹ and Agnes Hotz-Wagenblatt¹

¹Department of Molecular Biophysics, German Cancer Research Center (DKFZ), Heidelberg, Germany

²Department of Human Molecular Genetics, Sackler Faculty of Medicine, Tel Aviv University, Tel Aviv, Israel

author email corresponding author email

BMC Genetics 2007, 8:78doi:10.1186/1471-2156-8-78


Published:	6 November 2007

Additional files

Additional File 1:

Keywords for tissue categories. Excel file with information about the keywords used to retrieve cell and tissue source information to assign a tissue category (first column) to every given tissue in the databases dbEST and EMBL.

Format: XLS Size: 17KB Download file

This file can be viewed with: Microsoft Excel Viewer

Additional File 2:

All tissue and tumor specificities. Excel file giving all tissue and tumor-specific TE-containing exons from the human and the mouse genome. There are 4 sheets, one for human tissue-specific TE-containing exons, one for human tumor-specific TE-containing exons, one for mouse tissue-specific TE-containing exons and the last for mouse tumor-specific TE-containing TE-containing exons.

Format: XLS Size: 25KB Download file

This file can be viewed with: Microsoft Excel Viewer