Plot of single marker association and pair-wise LD analysis of all SNPs forming the H1C haplotype. (a) The position of the markers and the ref sequence is with respect to the genome assembly hg17/May2004.(b) Association analysis of H1C haplotype SNPs with LOAD; plot of -log(P) for case-control test at the allelic level with LOAD. (c) Linkage disequilibrium plot depicting the D' value; the blocks are shaded corresponding to the values which were obtained from the LD analysis program haploview.
Mukherjee et al. BMC Genetics 2007 8:3 doi:10.1186/1471-2156-8-3