|
|
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| Position |
MAF (%) |
SNPs N. |
PCR (bp) |
T.A. |
Primer set (from Table 1) |
SSO probe |
|||
|
|
|||||||||
| -84 |
9.9 |
1 |
rs29228 |
5' |
613 |
A/G |
57°C |
1 |
cggacaaaaAcagaaatgt |
| 290 |
5.6 |
2 |
rs29234 |
5' |
525 |
A/C |
58°C |
2 |
agctgagccAagaggtgag |
| 1179 |
6.0 |
3 |
rs3130250 |
Ex1 |
762 |
G/A |
60°C |
3 |
agcttatcGagaccctct |
| 1715 |
23.0 |
4 |
rs2262263 |
Intr1 |
509 |
A/G |
60°C |
4 |
cccgcctcAgcttcccaa |
| 2498 |
7.3 |
5 |
rs2252711 |
Intr1 |
508 |
T/C |
58°C |
5 |
gagagacagTtaaagtaga |
| 2553 |
4.2 |
6 |
rs9257932 |
Intr1 |
408 |
T/C |
57°C |
6 |
ggcagcaatTtggccaagt |
| 2582 |
1.6 |
7 |
SNP01(novel) |
Intr1 |
408 |
G/A |
57°C |
6 |
aggcccataGgaggattca |
| 2925 |
1.7 |
8 |
SNP02(novel) |
Intr1 |
706 |
A/G |
59°C |
7 |
attagctggAtgcggcggt |
| 3129 |
22.8 |
9 |
rs2252734 |
Intr1 |
568 |
C/G |
57°C |
8 |
gaagaaCaattgcaatc |
| 4210 |
12.6 |
10 |
SNP03(novel) |
Intr2 |
642 |
G/A |
58°C |
9 |
gcccagcgccgtGgctc |
| 4217 |
10.5 |
11 |
rs3095294 |
Intr2 |
642 |
A/G |
58°C |
9 |
ctcacAcctgtaatccca |
| 4413 |
14.5 |
12 |
rs2535262 |
Intr2 |
507 |
G/A |
57°C |
10 |
gtgaacccGgaagcggag |
| 4482 |
17.7 |
13 |
rs2535261 |
Intr2 |
507 |
G/A |
57°C |
10 |
cagcgagactccGtctca |
| 4521 |
9.8 |
14 |
rs9257933 |
Intr2 |
507 |
G/A |
57°C |
10 |
gtatttgtgagcgcGcac |
| 4617 |
7.0 |
15 |
rs3135050 |
Intr2 |
580 |
T/C |
63°C |
11 |
gagatgtcacTttttggc |
| 4799 |
35.9 |
16 |
rs3095292 |
Intr2 |
580 |
G/A |
63°C |
11 |
ccgagtagctgGgattac |
| 5062 |
20.9 |
17 |
rs2535260 |
Intr2 |
584 |
C/G |
62°C |
12 |
aggtgaagcCgatggagg |
| 5523 |
10.6 |
18 |
rs3130251 |
Intr2 |
518 |
C/T |
60°C |
13 |
cacctataaCcccaaaac |
| 7769 |
1.1 |
19 |
rs2857783 |
Intr2 |
569 |
T/C |
59°C |
14 |
acttgaaagTaaaggtag |
| 9199 |
47.4 |
20 |
rs2535253 |
Intr2 |
591 |
A/C |
59°C |
15 |
attacaggaAtgtgccacc |
| 9875 |
16.3 |
21 |
SNP04(novel) |
Intr2 |
404 |
A/G |
56°C |
16 |
ccttgagggActtcagat |
| 10230 |
10.3 |
22 |
rs2857766 |
Ex3 |
493 |
G/C |
58°C |
17 |
tcctgcagatcactGttg |
| 10239 |
1.1 |
23 |
rs3130253 |
Ex3 |
493 |
G/A |
58°C |
17 |
ttggcctcGtcttcctct |
| 10495 |
4.4 |
24 |
rs2857767 |
Intr3 |
573 |
C/G |
62°C |
18 |
taactatgCcatatagtaa |
| 10738 |
1.3 |
25 |
rs2857768 |
Intr3 |
573 |
T/C |
62°C |
18 |
ttgtttcctcTttctccat |
| 10844 |
6.7 |
26 |
rs2535249 |
Intr3 |
573 |
A/G |
62°C |
18 |
tctccccaAtgccagagca |
| 11154 |
4.5 |
27 |
rs17184486 |
Intr3 |
493 |
A/G |
56°C |
19 |
gattctccAagcttcagtt |
| 11195 |
5.3 |
28 |
rs2857771 |
Intr3 |
493 |
C/T |
56°C |
19 |
aacatcctCcctcctaaat |
| 11197 |
5.3 |
29 |
rs2535247 |
Intr3 |
493 |
C/G |
56°C |
19 |
aacatcctccCtcctaaat |
| 11544 |
12.9 |
30 |
rs2071652 |
Intr3 |
740 |
C/T |
62°C |
20 |
ccaggctgCagagaaatag |
| 11735 |
11.6 |
31 |
rs17184521 |
Intr4 |
740 |
G/A |
62°C |
20 |
aaatggtcccGttcttgga |
| 12155 |
36.3 |
32 |
rs2071653 |
Intr5 |
583 |
C/T |
57°C |
21 |
tacaaaaaCgttatcttat |
| 12556 |
9.2 |
33 |
SNP05(novel) |
Intr5 |
614 |
C/A |
61°C |
22 |
cagatggtaCcttctctga |
| 12636 |
17.6 |
34 |
rs2535246 |
Intr5 |
614 |
T/G |
61°C |
22 |
cacagagTtctatcgtacg |
| 13049 |
22.2 |
35 |
rs2535245 |
Intr5 |
545 |
T/C |
58°C |
23 |
ctcagcctccTgagtagct |
| 13937 |
35.8 |
36 |
rs3095291 |
Intr5 |
713 |
G/C |
58°C |
24 |
cacgcccaGctaattttta |
| 15643 |
13.9 |
37 |
SNP06(novel) |
Ex8 |
527 |
G/A |
59°C |
25 |
tgtgaaggGaaggaagagg |
| 16003 |
11.8 |
38 |
rs9257936 |
Ex8 |
593 |
C/T |
59°C |
26 |
gataCgagttttggccggg |
| 16248 |
6.2 |
39 |
rs3135049 |
Ex8 |
593 |
C/T |
59°C |
26 |
agctgagatcgCgccactg |
| 16457 |
13.8 |
40 |
SNP07(novel) |
3' |
569 |
A/G |
61°C |
27 |
attaccccagAggtcagtc |
Marrosu et al. BMC Genetics 2007 8:25 doi:10.1186/1471-2156-8-25 |
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