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Position (base in bold) and type of paired base mismatch(es) between primer pair LMWF3/LMWR4 and eight BAC clone templates. |
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| BAC clone (template) |
LMWF3 (5'→3') GACAAGTGCCATTGCACAGA |
Primer-template mismatch |
LMWR4 (5'→3') GCTGTACAACGGCACATTGA |
Primer-template mismatch |
N-terminal sequence |
|
|
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| TaE0503E07 |
GACAAGTGCCATTGCACAGA |
No mismatch |
GCTGTACAACGGCACATTGA |
No mismatch |
METSCISG |
| TaE1238L16 |
GACAAGTGCCATTGCACAAA |
G:Ta |
GCTGTACAACGGCACGTTGA |
A:C |
METSRVPG |
| TaE0154F22 |
GACAAGTGCCATTGCACAAA |
G:T |
TCTATACAACGGCACATTGA |
G:A, G:T |
MENSHIPG |
| TaE0359D24 |
AACAAGTGCCATTGCACAAA |
G:T (2×) |
TCTGTACAACGGCACATTGA |
G:A |
IENSHIPG |
| TaE1157C20 |
GACAAGTGCCATTGCACAAA |
G:T |
GCCGTACACCGGCACGTTGA |
T:G, A:G, A:C |
METSHIPS |
| TaE0703A09 |
GACAAGTGCCATTGCACAAA |
G:T |
GCCGTACACCGGCACGTTGA |
T:G, A:G, A:C |
METSHIPG |
| TaE0099E23 |
GACATCTGCCATTGCACAGA |
A:A, G:G |
GCTGTACAACGGCACATTGA |
No mismatch |
METSCIPG |
| TaE0072P19 |
GACATCTGCCATTGCACAGA |
A:A, G:G |
GCTGTACAACGGCACATTAA |
G:T |
METSCIPG |
|
aThe first base from the primer and the second base from complementary sequence of template. | |||||
Huang and Cloutier BMC Genetics 2007 8:18 doi:10.1186/1471-2156-8-18 |
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