Table 1

Bovine PRNP haplotype frequencies in populations of U.S. cattle

Network #1a

Network #2

Haplotype frequencies




Haplotype

n = 188d

n = 172

n = 78

n = 102

n = 40






#

449b

1392

1576

1701

4136

4450–4461c

4732

4776

6811

8631

9162

9786

13793

13861

13925

17284

20720

20957

21680

Bos taurus

Holstein

British

Continental

Indicus cpe


1

T

C

C

G

C

Z

G

C

A

A

T

T

G

C

G

G

T

C

T

0.102

-

0.158

0.067

0.125

2

T

C

C

G

C

Z

G

C

A

A

T

T

G

C

C

G

C

C

C

0.100

0.264

0.083

0.099

0.075

3

G

C

C

A

C

I

A

T

A

G

T

C

A

G

C

G

C

C

C

0.087

0.059

0.044

0.088

-

4

T

C

C

G

C

Z

G

C

A

A

T

T

G

C

C

G

C

C

T

0.081

-

0.075

0.073

0.075

5

T

C

C

G

C

Z

G

C

A

A

T

T

G

C

G

G

C

T

T

0.071

0.030

0.079

0.029

-

6

T

C

C

A

C

Z

G

C

A

G

T

T

A

C

C

G

C

C

T

0.049

-

0.026

0.078

0.025

7

G

C

C

A

T

I

A

C

A

G

C

C

A

G

C

G

C

C

T

0.033

-

0.039

-

-

8

T

C

C

G

C

Z

G

C

A

A

T

T

G

C

G

G

C

C

T

0.027

-

-

0.069

-

9

G

C

C

A

C

I

A

C

A

G

T

C

A

G

C

G

C

C

C

0.027

0.042

0.074

-

-

10

T

C

C

A

C

Z

G

C

T

A

T

T

G

C

G

G

C

T

T

0.027

-

0.026

0.029

-

11

T

C

C

G

C

Z

G

C

A

A

T

T

A

C

C

G

C

C

T

0.024

-

-

0.029

-

12

G

C

C

A

C

I

A

T

A

G

T

C

A

G

C

A

C

C

C

- f

0.091

-

-

-

13

G

C

C

A

C

I

G

C

A

G

T

C

A

G

C

G

C

C

C

-

0.084

-

-

-

14

T

C

C

G

C

Z

G

C

A

A

T

T

A

G

C

G

C

C

C

-

0.053

0.036

-

-

15

T

C

C

G

C

Z

G

C

A

A

T

T

A

C

C

G

C

C

C

-

0.052

-

-

-

16

G

C

C

A

T

I

A

C

A

G

C

T

A

G

C

G

C

C

T

-

0.032

-

0.029

-

17

T

C

C

A

C

I

G

C

A

G

T

T

A

G

C

G

C

C

T

-

0.030

-

-

-

18

G

T

C

A

T

I

A

C

A

G

T

T

A

C

C

G

C

C

T

-

-

-

0.039

-

19

T

C

T

A

C

I

G

C

A

G

T

T

A

C

C

G

C

C

T

-

-

-

-

0.123

Total haplotype frequency

0.628

0.737

0.640

0.629

0.423


aNetworks 1 and 2 are shown in figure 5.

bNucleotide position in GenBank accession # DQ457195.

cTwelve base InDel, I = GGGGGCCGCGGC, Z = deletion.

dNumber of haploid genomes.

eComposites of U.S. Brahman.

fIndicates 0.000 frequency in population.

Clawson et al. BMC Genetics 2006 7:51   doi:10.1186/1471-2156-7-51

Open Data